DY305261

Overview
NameDY305261
Unique NameDY305261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1267
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_EHRCR (NADH-quinone oxidoreductase subunit B OS=Ehrlichia chaffeensis (strain Arkansas) GN=nuoB PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.777e-54
Identity = 101/146 (69.18%), Postives = 119/146 (81.51%), Query Frame = 3
Query:  318 FVISKLDDVVNYI----RRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            F++++  D++NYI    R  S+WPM+FGLACCAVEMMHT A+RYDLDR+G++FR SPRQ+DVM+VAGTLTNKMAPALRKVYDQM +PR+VISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYGI  LQ+K+NR
Sbjct:   22 FMVTQFSDLINYISNWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRASPRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIFCLQQKINR 167          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB2_GLUDA (NADH-quinone oxidoreductase subunit B 2 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.777e-54
Identity = 102/142 (71.83%), Postives = 114/142 (80.28%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV++ LD +VN+ R GS+WPMSFGLACCAVEM+H    RYDLDR GII R SPRQSDVM+VAGTLTNKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YGI QLQKK+ R
Sbjct:   43 FVVASLDKLVNWGRTGSLWPMSFGLACCAVEMIHAYMPRYDLDRMGIIPRGSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIFQLQKKIRR 184          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_WOLPP (NADH-quinone oxidoreductase subunit B OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=nuoB PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 5.170e-54
Identity = 101/154 (65.58%), Postives = 122/154 (79.22%), Query Frame = 3
Query:  306 KTAEFVISKLDDVVNYI----RRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 755
            K   F+I+K  D+++YI    R GS+WPM+FGLACCAVEMMHT ++RYDLDR+GIIFR SPRQ+DVM+VAGTLTNKMA ALRKVYDQM DP++V+SMGSCAN              CDRIVPVD+YVPGCPPTAEALLYG+L LQ K+ R +++
Sbjct:   14 KKEGFLITKFGDLIDYIMNWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIIFRASPRQADVMIVAGTLTNKMAAALRKVYDQMADPKYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGMLCLQNKIKRTKNI 167          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_WOLWR (NADH-quinone oxidoreductase subunit B OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=nuoB PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 8.818e-54
Identity = 102/156 (65.38%), Postives = 121/156 (77.56%), Query Frame = 3
Query:  297 GISKTAEFVISKLDDVVNYI----RRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRD 752
            G  K   F+++K  D+ +Y+    R GS+WPM+FGLACCAVEMMHT ++RYDLDR+GI+FR SPRQSDVM+VAGTLTNKMA ALRKVYDQM DP++VISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYG+L LQ K+ R R+
Sbjct:   12 GRYKKEGFLVTKFGDLTDYVMNWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRASPRQSDVMIVAGTLTNKMAAALRKVYDQMADPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGMLCLQNKIKRTRN 167          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_WOLPM (NADH-quinone oxidoreductase subunit B OS=Wolbachia pipientis wMel GN=nuoB PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 8.818e-54
Identity = 102/156 (65.38%), Postives = 121/156 (77.56%), Query Frame = 3
Query:  297 GISKTAEFVISKLDDVVNYI----RRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRD 752
            G  K   F+++K  D+ +Y+    R GS+WPM+FGLACCAVEMMHT ++RYDLDR+GI+FR SPRQSDVM+VAGTLTNKMA ALRKVYDQM DP++VISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYG+L LQ K+ R R+
Sbjct:   12 GRYKKEGFLVTKFGDLTDYVMNWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRASPRQSDVMIVAGTLTNKMAAALRKVYDQMADPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGMLCLQNKIKRTRN 167          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_DIAST (NADH-quinone oxidoreductase subunit B OS=Diaphorobacter sp. (strain TPSY) GN=nuoB PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.504e-53
Identity = 99/143 (69.23%), Postives = 114/143 (79.72%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            F+ +  D VVN+ + GS+WPM+FGLACCAVEMMH  AARYDL RFG  +FR SPRQSD+M+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YGI+QLQ+K+ R
Sbjct:   10 FITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDLGRFGAEVFRASPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQQKIRR 152          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_ACISJ (NADH-quinone oxidoreductase subunit B OS=Acidovorax sp. (strain JS42) GN=nuoB PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.504e-53
Identity = 99/143 (69.23%), Postives = 114/143 (79.72%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            F+ +  D VVN+ + GS+WPM+FGLACCAVEMMH  AARYDL RFG  +FR SPRQSD+M+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YGI+QLQ+K+ R
Sbjct:   10 FITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDLGRFGAEVFRASPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQQKIRR 152          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_ANAMM (NADH-quinone oxidoreductase subunit B OS=Anaplasma marginale (strain St. Maries) GN=nuoB PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.964e-53
Identity = 102/150 (68.00%), Postives = 120/150 (80.00%), Query Frame = 3
Query:  306 KTAEFVISK----LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            K   FV++K    +D VV + R GS+WPM+FGLACCAVEMMHT A+RYDLDR+G++FR SPRQ+DVM+VAGTLTNKMAPALR+VYDQM +P++VISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYGIL LQ+K+ R
Sbjct:   18 KDRGFVVTKFSDLVDSVVRWSRSGSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRASPRQADVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILCLQQKIIR 167          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_ANAMF (NADH-quinone oxidoreductase subunit B OS=Anaplasma marginale (strain Florida) GN=nuoB PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.964e-53
Identity = 102/150 (68.00%), Postives = 120/150 (80.00%), Query Frame = 3
Query:  306 KTAEFVISK----LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            K   FV++K    +D VV + R GS+WPM+FGLACCAVEMMHT A+RYDLDR+G++FR SPRQ+DVM+VAGTLTNKMAPALR+VYDQM +P++VISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYGIL LQ+K+ R
Sbjct:   33 KDRGFVVTKFSDLVDSVVRWSRSGSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRASPRQADVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILCLQQKIIR 182          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_WOLTR (NADH-quinone oxidoreductase subunit B OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=nuoB PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 2.566e-53
Identity = 98/143 (68.53%), Postives = 117/143 (81.82%), Query Frame = 3
Query:  327 SKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 755
            S +D V+N+ R GS+WPM+FGLACCAVEMMHT ++RYDLDR+GI+FR SPRQ+DVM+VAGTLTNKMA ALRKVYDQM DP++V+SMGSCAN              CDRIVPVDIYVPGCPPTAEALLYG+L LQ K+ R +++
Sbjct:   26 SLIDYVINWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRASPRQADVMIVAGTLTNKMAAALRKVYDQMADPKYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLCLQNKIKRTQNI 168          
The following BLAST results are available for this feature:
BLAST of DY305261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_EHRCR1.777e-5469.18NADH-quinone oxidoreductase subunit B OS=Ehrlichia... [more]
NUOB2_GLUDA1.777e-5471.83NADH-quinone oxidoreductase subunit B 2 OS=Glucona... [more]
NUOB_WOLPP5.170e-5465.58NADH-quinone oxidoreductase subunit B OS=Wolbachia... [more]
NUOB_WOLWR8.818e-5465.38NADH-quinone oxidoreductase subunit B OS=Wolbachia... [more]
NUOB_WOLPM8.818e-5465.38NADH-quinone oxidoreductase subunit B OS=Wolbachia... [more]
NUOB_DIAST1.504e-5369.23NADH-quinone oxidoreductase subunit B OS=Diaphorob... [more]
NUOB_ACISJ1.504e-5369.23NADH-quinone oxidoreductase subunit B OS=Acidovora... [more]
NUOB_ANAMM1.964e-5368.00NADH-quinone oxidoreductase subunit B OS=Anaplasma... [more]
NUOB_ANAMF1.964e-5368.00NADH-quinone oxidoreductase subunit B OS=Anaplasma... [more]
NUOB_WOLTR2.566e-5368.53NADH-quinone oxidoreductase subunit B OS=Wolbachia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AF02RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305261 ID=DY305261; Name=DY305261; organism=Citrus clementina; type=EST; length=1267bp
GCAACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAA
ACCAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAA
AAAAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGC
GCCTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTC
CCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCC
CACCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTA
TCTCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAAC
TATATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTG
CGCCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGAT
TCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTA
GCTGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGA
TCAAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATG
GTGGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGG
ATTGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGC
CCTACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAG
ATTTGTATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCCTGGC
AGTTACACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTG
GTCTAATGAAATGTCCATGTAAAAGGAAAAAAATATTTTCACCTGTTTAA
AAAAATACGTCCTGGAAAAGGGCTTTAGGTGGTGCTAAAACCAATAATTC
AAGAATTTGGAACCTTTGGTTCCCCGGCCTTGCCAACACCGAAACCTGTC
CCCTGGAAAAAATTATTTAAAAAGGGCCCAAAAAAAAAAAAAAAAAAAAC
CTCCAAGGGGGGGGGCCCGGGCCCCCAATTTCCCCCCCTAAAATGAGAAT
CAAAATAAAAATTCACCTGGCCCCTTCCTTTTTTAAAAACCTCCCGGGAC
CGGGGAAAAAAAACCCTGGGGGGTTTTACCCCAACAATTAAAACCTCCCT
TCCTGGCCCCCAAACCCATCCCCCCCTCTTTTCTCCCCCCCCCGCCCCGG
TGGGGCGACGTAAAAAA
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