DY305261

Overview
NameDY305261
Unique NameDY305261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1267
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_XANAC (NADH-quinone oxidoreductase subunit B OS=Xanthomonas axonopodis pv. citri GN=nuoB PE=3 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 2.242e-57
Identity = 103/146 (70.55%), Postives = 121/146 (82.88%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 755
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_RALSO (NADH-quinone oxidoreductase subunit B OS=Ralstonia solanacearum GN=nuoB PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 2.242e-57
Identity = 102/142 (71.83%), Postives = 117/142 (82.39%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YGI+QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQAKIRR 152          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_RALPJ (NADH-quinone oxidoreductase subunit B OS=Ralstonia pickettii (strain 12J) GN=nuoB PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 2.242e-57
Identity = 102/142 (71.83%), Postives = 117/142 (82.39%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YGI+QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQAKIRR 152          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_LARHH (NADH-quinone oxidoreductase subunit B OS=Laribacter hongkongensis (strain HLHK9) GN=nuoB PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 2.242e-57
Identity = 102/142 (71.83%), Postives = 117/142 (82.39%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            F+ +  D V+N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFGI+FRPSPRQSD+M+VAGTL NKMAPALRKVYDQM +PRWV+SMGSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:   11 FITTSADKVLNWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIKR 152          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_HERAR (NADH-quinone oxidoreductase subunit B OS=Herminiimonas arsenicoxydans GN=nuoB PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 2.242e-57
Identity = 102/142 (71.83%), Postives = 117/142 (82.39%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYD+DRFG++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDMDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIMQLQNKIRR 152          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB1_AZOSB (NADH-quinone oxidoreductase subunit B 1 OS=Azoarcus sp. (strain BH72) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 2.242e-57
Identity = 102/142 (71.83%), Postives = 117/142 (82.39%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV + LD V+N+ R GS+WPM+FGLACCAVEM+H G +RYDLDRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:   11 FVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIKR 152          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_POLNA (NADH-quinone oxidoreductase subunit B OS=Polaromonas naphthalenivorans (strain CJ2) GN=nuoB PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 3.825e-57
Identity = 102/142 (71.83%), Postives = 117/142 (82.39%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV +  D VVN+ + GS+WPM+FGLACCAVEMMH GAARYD+DRFG++FRPSPRQSD+M+VAGTL NKM PALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ+K+ R
Sbjct:   11 FVTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQQKIRR 152          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_BURVG (NADH-quinone oxidoreductase subunit B OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=nuoB PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 3.825e-57
Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_BURTA (NADH-quinone oxidoreductase subunit B OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=nuoB PE=3 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 3.825e-57
Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_BURS3 (NADH-quinone oxidoreductase subunit B OS=Burkholderia sp. (strain 383) GN=nuoB PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 3.825e-57
Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152          
The following BLAST results are available for this feature:
BLAST of DY305261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_XANAC2.242e-5770.55NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_RALSO2.242e-5771.83NADH-quinone oxidoreductase subunit B OS=Ralstonia... [more]
NUOB_RALPJ2.242e-5771.83NADH-quinone oxidoreductase subunit B OS=Ralstonia... [more]
NUOB_LARHH2.242e-5771.83NADH-quinone oxidoreductase subunit B OS=Laribacte... [more]
NUOB_HERAR2.242e-5771.83NADH-quinone oxidoreductase subunit B OS=Herminiim... [more]
NUOB1_AZOSB2.242e-5771.83NADH-quinone oxidoreductase subunit B 1 OS=Azoarcu... [more]
NUOB_POLNA3.825e-5771.83NADH-quinone oxidoreductase subunit B OS=Polaromon... [more]
NUOB_BURVG3.825e-5771.13NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURTA3.825e-5771.13NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURS33.825e-5771.13NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AF02RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305261 ID=DY305261; Name=DY305261; organism=Citrus clementina; type=EST; length=1267bp
GCAACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAA
ACCAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAA
AAAAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGC
GCCTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTC
CCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCC
CACCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTA
TCTCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAAC
TATATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTG
CGCCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGAT
TCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTA
GCTGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGA
TCAAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATG
GTGGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGG
ATTGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGC
CCTACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAG
ATTTGTATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCCTGGC
AGTTACACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTG
GTCTAATGAAATGTCCATGTAAAAGGAAAAAAATATTTTCACCTGTTTAA
AAAAATACGTCCTGGAAAAGGGCTTTAGGTGGTGCTAAAACCAATAATTC
AAGAATTTGGAACCTTTGGTTCCCCGGCCTTGCCAACACCGAAACCTGTC
CCCTGGAAAAAATTATTTAAAAAGGGCCCAAAAAAAAAAAAAAAAAAAAC
CTCCAAGGGGGGGGGCCCGGGCCCCCAATTTCCCCCCCTAAAATGAGAAT
CAAAATAAAAATTCACCTGGCCCCTTCCTTTTTTAAAAACCTCCCGGGAC
CGGGGAAAAAAAACCCTGGGGGGTTTTACCCCAACAATTAAAACCTCCCT
TCCTGGCCCCCAAACCCATCCCCCCCTCTTTTCTCCCCCCCCCGCCCCGG
TGGGGCGACGTAAAAAA
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