DY305268

Overview
NameDY305268
Unique NameDY305268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_AZOSE (Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN=glgA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 50/124 (40.32%), Postives = 69/124 (55.65%), Query Frame = 1
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE-GFTGFQMGSFS--VDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGS 363
            RI   AD  ++PSRFEPCGL Q+++ RYGT PIV +TGGLVD+V +    G   G  S  +  EA      AA+   V RAL  +  + A   +  NGMA+D SW G A ++    + +  A +
Sbjct:  374 RIEAGADAFVMPSRFEPCGLNQMYSQRYGTPPIVRATGGLVDSVGDFSVDGLHRGEASGFLFAEATP----AALVEAVDRALKVFADRVAWRTLCCNGMARDFSWGGSAGRYARLYVAMRAAAA 493          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_XANOR (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae GN=glgA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   19 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKW 327
            ADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+          A+   + RA  T+     LA M +  M +   W     K+
Sbjct:  398 ADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE----------ALRRCLERAFRTFRLPGLLAAMRRAAMLRPSGWDVAGNKY 491          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_XANOP (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   19 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKW 327
            ADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+          A+   + RA  T+     LA M +  M +   W     K+
Sbjct:  398 ADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE----------ALRRCLERAFRTFRLPGLLAAMRRAAMLRPSGWDVAGNKY 491          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_XANOM (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   19 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKW 327
            ADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+          A+   + RA  T+     LA M +  M +   W     K+
Sbjct:  398 ADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE----------ALRRCLERAFRTFRLPGLLAAMRRAAMLRPSGWDVAGNKY 491          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_RHILO (Glycogen synthase OS=Rhizobium loti GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 42/105 (40.00%), Postives = 59/105 (56.19%), Query Frame = 1
Query:   22 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEE 333
            D I+IPSRFEPCGL QL+ +RYG VP+VA TGGL DT+ +          +   +   P +  A+   +RR +  Y   A  E + + GM  D+SW   A+K+ E
Sbjct:  367 DAIIIPSRFEPCGLTQLYGLRYGCVPVVARTGGLADTIIDANEAAMAAGVATGLQFA-PNNGGAMLHAIRRLVDAYADPAAFETIQRQGMKADVSWDKSAEKYLE 470          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_NITEU (Glycogen synthase OS=Nitrosomonas europaea GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 46/115 (40.00%), Postives = 60/115 (52.17%), Query Frame = 1
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE---------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL-ATYGTQALAEMMKNGMAQDLSWKGPA 318
            RI   AD  L+PSRFEPCGL Q+++ RYGT PIV +TGGL+DTV          E  +GF     + D          A    + RA+ A Y T+    +  NGM +D SW+  A
Sbjct:  378 RINASADCFLMPSRFEPCGLNQMYSQRYGTPPIVHTTGGLIDTVTDLAPDTPAGESASGFHFHEMTAD----------AFMNGIGRAIDAYYNTRLWKTLQHNGMRKDFSWRSSA 482          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_AGRRK (Glycogen synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 1
Query:   22 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 327
            D I+IPSRFEPCGL QL+ +RYG VPIVA TGGL DT+ +          +   +   PV    +   +RRA+  +  + +  +M K GM  D+SW   A+++
Sbjct:  367 DAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTIIDANHAALQAKVATGIQ-FSPVTAEGLLQAIRRAIYLFQDRKVWTQMQKQGMKSDVSWGKSAERY 468          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA2_BRAJA (Glycogen synthase 2 OS=Bradyrhizobium japonicum GN=glgA2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    7 IRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEG--FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA-LATYGTQALAEMMKNGMAQDLSWKGPA 318
            I+  +D +++PSRFEPCGL QL A+RYG VPIV+  GGL DT+    E G   TGF+ G          PV   A++ T+R+A  A +      ++ +NG+A D+SW+  A
Sbjct:  366 IQAGSDALIVPSRFEPCGLTQLCALRYGAVPIVSRVGGLEDTIVDIGEAGREATGFKFG----------PVTADALAGTLRKANTAFHDKLTWRQLQRNGLATDVSWRSRA 466          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_SYNPX (Glycogen synthase OS=Synechococcus sp. (strain WH8102) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 53/142 (37.32%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   19 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 423
            +D  L+PSRFEPCG+ QL+AMRYG+VP+V   GGLVDTV      +   TGF    F       +PVD    +  VR   A     +  E+ K GM QD SW   A  ++  ++  +V G  EP  D   +   ++   A P
Sbjct:  348 SDAFLMPSRFEPCGISQLYAMRYGSVPVVRKVGGLVDTVPPHSPADASGTGFCFDRF-------EPVDF--YTALVRAWEAYRHRDSWQELQKRGMQQDYSWDRSAIDYD--VMYRDVCGLKEPTPDAAMVEQFSQGQAADP 478          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_SALAR (Glycogen synthase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 351
            RI   AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  362 RIMGGADIILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
The following BLAST results are available for this feature:
BLAST of DY305268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
GLGA_AZOSE1.022e-1340.32Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN... [more]
GLGA_XANOR1.334e-1340.38Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANOP1.334e-1340.38Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANOM1.334e-1340.38Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_RHILO1.334e-1340.00Glycogen synthase OS=Rhizobium loti GN=glgA PE=3 S... [more]
GLGA_NITEU1.334e-1340.00Glycogen synthase OS=Nitrosomonas europaea GN=glgA... [more]
GLGA_AGRRK1.334e-1339.81Glycogen synthase OS=Agrobacterium radiobacter (st... [more]
GLGA2_BRAJA1.334e-1341.44Glycogen synthase 2 OS=Bradyrhizobium japonicum GN... [more]
GLGA_SYNPX1.743e-1337.32Glycogen synthase OS=Synechococcus sp. (strain WH8... [more]
GLGA_SALAR1.743e-1337.70Glycogen synthase OS=Salmonella arizonae (strain A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AG02RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305268 ID=DY305268; Name=DY305268; organism=Citrus clementina; type=EST; length=685bp
TGCCGAATTCGGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGA
ACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTA
TCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACA
GGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGT
AGATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATG
GTACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTT
TCATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGA
AGTTGCTGGTAGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTG
CCAAGGAAAATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTT
TTATTTTGGACCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATAT
TACTTAGGAAATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTC
AATAATGGTTTGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATA
TTAAGTTCTGTTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCAC
TCTCCTGAAATGAAAAAGTTCAACTGAACAATAAA
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