DY305268

Overview
NameDY305268
Unique NameDY305268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_MARMS (Glycogen synthase OS=Marinomonas sp. (strain MWYL1) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 46/118 (38.98%), Postives = 62/118 (52.54%), Query Frame = 1 
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW---EETLLN 345
            R++   D +LIPSRFEPCGL QL+A++YGT+PIV  TGGL DTV E   G +   F             A+   + R++  +  T    E  KN M  D SW     +W    E+L+N
Sbjct:  366 RLQAGIDALLIPSRFEPCGLTQLYALKYGTLPIVRQTGGLADTVFE--DGERANGF-----VFKEASAKALQAAMERSIECFHDTNRWQEKQKNAMCYDYSWDAVTDQWISLYESLIN 476
[Close]
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_SALTY (Glycogen synthase OS=Salmonella typhimurium GN=glgA PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 351
            RI   AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_SALTI (Glycogen synthase OS=Salmonella typhi GN=glgA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 351
            RI   AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_SALSV (Glycogen synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 351
            RI   AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_SALPK (Glycogen synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 351
            RI   AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_SALPC (Glycogen synthase OS=Salmonella paratyphi C (strain RKS4594) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 351
            RI   AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_SALPB (Glycogen synthase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 351
            RI   AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_SALPA (Glycogen synthase OS=Salmonella paratyphi A GN=glgA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 351
            RI   AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_SALNS (Glycogen synthase OS=Salmonella newport (strain SL254) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 351
            RI   AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_SALHS (Glycogen synthase OS=Salmonella heidelberg (strain SL476) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 351
            RI   AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
The following BLAST results are available for this feature:
BLAST of DY305268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
GLGA_MARMS1.743e-1338.98Glycogen synthase OS=Marinomonas sp. (strain MWYL1... [more]
GLGA_SALTY2.276e-1337.70Glycogen synthase OS=Salmonella typhimurium GN=glg... [more]
GLGA_SALTI2.276e-1337.70Glycogen synthase OS=Salmonella typhi GN=glgA PE=3... [more]
GLGA_SALSV2.276e-1337.70Glycogen synthase OS=Salmonella schwarzengrund (st... [more]
GLGA_SALPK2.276e-1337.70Glycogen synthase OS=Salmonella paratyphi A (strai... [more]
GLGA_SALPC2.276e-1337.70Glycogen synthase OS=Salmonella paratyphi C (strai... [more]
GLGA_SALPB2.276e-1337.70Glycogen synthase OS=Salmonella paratyphi B (strai... [more]
GLGA_SALPA2.276e-1337.70Glycogen synthase OS=Salmonella paratyphi A GN=glg... [more]
GLGA_SALNS2.276e-1337.70Glycogen synthase OS=Salmonella newport (strain SL... [more]
GLGA_SALHS2.276e-1337.70Glycogen synthase OS=Salmonella heidelberg (strain... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AG02RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305268 ID=DY305268; Name=DY305268; organism=Citrus clementina; type=EST; length=685bp
TGCCGAATTCGGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGA
ACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTA
TCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACA
GGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGT
AGATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATG
GTACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTT
TCATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGA
AGTTGCTGGTAGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTG
CCAAGGAAAATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTT
TTATTTTGGACCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATAT
TACTTAGGAAATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTC
AATAATGGTTTGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATA
TTAAGTTCTGTTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCAC
TCTCCTGAAATGAAAAAGTTCAACTGAACAATAAA
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