DY305268

Overview
NameDY305268
Unique NameDY305268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_DEIGD (Glycogen synthase OS=Deinococcus geothermalis (strain DSM 11300) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 47/109 (43.12%), Postives = 59/109 (54.13%), Query Frame = 1
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 327
            RI   AD   +PSRFEPCGL Q+ A+RYGT+PIV  TGGLVDTV  G  GF+    + +          A++T  R A  T          MK GM  D SW+G A+ +
Sbjct:  339 RIYAGADAFAMPSRFEPCGLSQMIALRYGTLPIVRETGGLVDTV-PGDVGFRFADATTE----------ALATACRDARTTLEDVVEWQSRMKRGMELDFSWEGSARHY 436          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: SSY2_SOLTU (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 47/127 (37.01%), Postives = 63/127 (49.61%), Query Frame = 1
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE--------------MMKNGMAQDLSWKGPAKKWEETLL 342
            RI   AD +L+PSRFEPCGL QL+AM+YGT+P+V + GGL DTV                +  DP + + +  T  RA A+    AL                +    M QDLSW   A+ +EE L+
Sbjct:  651 RITAGADILLMPSRFEPCGLNQLYAMKYGTIPVVHAVGGLRDTV----------------QPFDPFNESGLGWTFSRAEASQLIHALGNCLLTYREYKKSWEGIQTRCMTQDLSWDNAAQNYEEVLI 761          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_SHIFL (Glycogen synthase OS=Shigella flexneri GN=glgA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 351
            RI   AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV     E    G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_SHIF8 (Glycogen synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 351
            RI   AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV     E    G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_SHIDS (Glycogen synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 351
            RI   AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV     E    G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_SHIBS (Glycogen synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 351
            RI   AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV     E    G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNA------WSLLRAIRRAFVLWSRASLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_SHIB3 (Glycogen synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 351
            RI   AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV     E    G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPT (Glycogen synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVD--PVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 348
            +I+  AD +L+PSRFEPCGL QL A+RYG VP+VA  GGL DTV +     +M + +     V   PV   A+     +  A +    A   +  NGM  D+SWK PA+ + +   +L
Sbjct:  365 QIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVD---ANEMATATGVATGVQFAPVTTDALIKAFGKTRALFADVVAWRNLQINGMTTDVSWKNPAQHYAKLYRDL 479          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPA (Glycogen synthase OS=Rhodopseudomonas palustris GN=glgA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVD--PVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 348
            +I+  AD +L+PSRFEPCGL QL A+RYG VP+VA  GGL DTV +     +M + +     V   PV   A+     +  A +    A   +  NGM  D+SWK PA+ + +   +L
Sbjct:  365 QIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVD---ANEMATATGVATGVQFAPVTTDALIKAFGKTRALFADVVAWRNLQINGMTTDVSWKNPAQHYAKLYRDL 479          
BLAST of DY305268 vs. ExPASy Swiss-Prot
Match: GLGA_RHOCS (Glycogen synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 40/111 (36.04%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    4 RIRHEADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 333
            RI+  AD +L+PSRFEPCGL Q++A+RYG +P+V+  GGL DTV +  T   +   S      +PV +  +   + RA A +    L   + +N M +D+ W   A+ + +
Sbjct:  382 RIQAGADVLLVPSRFEPCGLTQMYALRYGALPLVSRVGGLADTVTD-VTESSLADGSATGFVFEPVGLMPLIHAMERAAALWRRPDLWRTVQRNAMGRDVGWAASARHYAD 491          
The following BLAST results are available for this feature:
BLAST of DY305268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
GLGA_DEIGD2.972e-1343.12Glycogen synthase OS=Deinococcus geothermalis (str... [more]
SSY2_SOLTU3.882e-1337.01Granule-bound starch synthase 2, chloroplastic/amy... [more]
GLGA_SHIFL3.882e-1338.52Glycogen synthase OS=Shigella flexneri GN=glgA PE=... [more]
GLGA_SHIF83.882e-1338.52Glycogen synthase OS=Shigella flexneri serotype 5b... [more]
GLGA_SHIDS3.882e-1338.52Glycogen synthase OS=Shigella dysenteriae serotype... [more]
GLGA_SHIBS3.882e-1338.52Glycogen synthase OS=Shigella boydii serotype 4 (s... [more]
GLGA_SHIB33.882e-1338.52Glycogen synthase OS=Shigella boydii serotype 18 (... [more]
GLGA_RHOPT3.882e-1338.98Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_RHOPA3.882e-1338.98Glycogen synthase OS=Rhodopseudomonas palustris GN... [more]
GLGA_RHOCS3.882e-1336.04Glycogen synthase OS=Rhodospirillum centenum (stra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AG02RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305268 ID=DY305268; Name=DY305268; organism=Citrus clementina; type=EST; length=685bp
TGCCGAATTCGGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGA
ACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTA
TCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACA
GGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGT
AGATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATG
GTACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTT
TCATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGA
AGTTGCTGGTAGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTG
CCAAGGAAAATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTT
TTATTTTGGACCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATAT
TACTTAGGAAATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTC
AATAATGGTTTGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATA
TTAAGTTCTGTTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCAC
TCTCCTGAAATGAAAAAGTTCAACTGAACAATAAA
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