DY305368

Overview
NameDY305368
Unique NameDY305368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1253
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305368 vs. ExPASy Swiss-Prot
Match: UDG_SHIFL (Putative UDP-glucose 6-dehydrogenase OS=Shigella flexneri GN=udg PE=5 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.890e-18
Identity = 77/257 (29.96%), Postives = 119/257 (46.30%), Query Frame = 3
Query:   30 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK--IVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSCFHKEILNLV 791
            EV  +DI  SR+   N    PI +  +   ++  +   + F+  ++K+ +  D  +V + TPT           +     S   VI DV + +   ++V KSTVPV  TA   +K  T N       I+ +PEFL EG A+ D  +P R++IG R     + A    +      +P    L T+   AE  KL AN +LA R++  N + +  E+ G N  Q+   V  D  IG  + N S G+GG C  K+   L+
Sbjct:   24 EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNATLDKNEAYRDADYVIIATPTDYD-----PKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPT---LFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL 262          
BLAST of DY305368 vs. ExPASy Swiss-Prot
Match: UDG_ECOLI (UDP-glucose 6-dehydrogenase OS=Escherichia coli (strain K12) GN=ugd PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.890e-18
Identity = 77/257 (29.96%), Postives = 120/257 (46.69%), Query Frame = 3
Query:   30 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK--IVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSCFHKEILNLV 791
            EV  +DI  SR+   N    PI +  +   ++  +   + F+  ++K+ +  D  +V + TPT           +     S   VI DV + +   ++V KSTVPV  TA   +K  T N       I+ +PEFL EG A+ D  +P R++IG R     + A    +      +P   +L T+   AE  KL AN +LA R++  N + +  E+ G N  Q+   V  D  IG  + N S G+GG C  K+   L+
Sbjct:   24 EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNATLDKNEAYRDADYVIIATPTDYD-----PKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIP---MLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNSRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL 262          
BLAST of DY305368 vs. ExPASy Swiss-Prot
Match: UDG_ECOL6 (UDP-glucose 6-dehydrogenase OS=Escherichia coli O6 GN=ugd PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.890e-18
Identity = 77/257 (29.96%), Postives = 119/257 (46.30%), Query Frame = 3
Query:   30 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK--IVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSCFHKEILNLV 791
            EV  +DI  SR+   N    PI +  +   ++  +   + F+  ++K+ +  D  +V + TPT           +     S   VI DV + +   ++V KSTVPV  TA   +K  T N       I+ +PEFL EG A+ D  +P R++IG R     + A    +      +P    L T+   AE  KL AN +LA R++  N + +  E+ G N  Q+   V  D  IG  + N S G+GG C  K+   L+
Sbjct:   24 EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNATLDKNEAYRDADYVIIATPTDYD-----PKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPT---LFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL 262          
BLAST of DY305368 vs. ExPASy Swiss-Prot
Match: ALGD_AZOVI (GDP-mannose 6-dehydrogenase OS=Azotobacter vinelandii GN=algD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.005e-17
Identity = 74/269 (27.51%), Postives = 125/269 (46.47%), Query Frame = 3
Query:   18 GPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDS--XIGPKFLNASVGFGGSCFHKEILNLVY 794
            G   EV  VDIS ++I+  N  + PI EPGL  ++ +  +   L  +T+V + V   ++  + V TP+K  G       +L Y E   R     + D ++   +VV  + +P      +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G++    L  +YA    +  I+   +  AE+ K   N + A +++  N +  + +A G +  +V   V  D+   +   ++   + FGGSC  K++  L Y
Sbjct:   21 GRGHEVVGVDISAAKIDMINQGKSPIVEPGLGELLAEGVKTGRLRGTTNVTEAVLATELSMLCVGTPSKLNG-----DLELDYIEEVCRQMGSALRDKTERHTVVVRSTVLPGTVHNVVIPILEEFSGKKAGVDFGVAVNPEFLRESTAIKDYNFPPMTVIGELDKASGRR----LASIYAEL--DAPIVRKGIAVAEMIKYTCNVWHATKVTFANEIGNIAKAAGVDGREVMEVVCMDNKLNLSQYYMRPGLAFGGSCLPKDVSALSY 278          
BLAST of DY305368 vs. ExPASy Swiss-Prot
Match: WECC_METM7 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=wecC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.714e-17
Identity = 75/246 (30.49%), Postives = 114/246 (46.34%), Query Frame = 3
Query:   30 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 764
            EV  VD++  R+N   + +L I EPGL  +VK     KNL   T  E    EAD   + V TP      G+ K  DLTY  SA + I    K   ++V +ST+P +T + I + +       K  +   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V E +I  T+  +AE+ KL  N +    I+  N  + +C+  G NV            +    LN   G GG C
Sbjct:   34 EVVGVDVNEKRVNHIKNGELKIEEPGLLTLVKGAINSKNLNVQTSAE----EADAFIICVPTPALENEDGS-KKCDLTYVMSAVQAIIPFLKDGNLIVVESTIPPETTKKIYETINK-----KIYVAHCPERVLPGKILKELVENDRI-IGG----INKKSAEMAKEIYKSFV-EGKIYITDSNTAEMVKLMENTYRDINIALANEFAKICDEIGVNVWDAIKIANKHPRV--NILNPGPGVGGHC 261          
BLAST of DY305368 vs. ExPASy Swiss-Prot
Match: WECC_METMP (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis GN=wecC PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.238e-17
Identity = 74/246 (30.08%), Postives = 116/246 (47.15%), Query Frame = 3
Query:   30 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 764
            +V  VD++  R+N   + +L I EPGL  +VK     KNL    +V    +EAD   + V TP   +  G+ K  DL+Y  SA   I    K   ++V +ST+P +T + I + L       K  +   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V E +I TT+  +AE+ KL  N +    I+  N  + +C+  G NV            +    LN   G GG C
Sbjct:   34 DVVGVDVNEKRVNQIKNGELKIEEPGLLTLVKGAINSKNL----NVRTSATEADAFIICVPTPALAKEDGS-KKCDLSYVMSAVEAILPFVKDGNLIVIESTIPPETTKKIYETLNK-----KIYVAHCPERVLPGKILKELVENDRI-IGGIN----KKSAEMAKEIYKSFV-EGQIYTTDSNTAEMVKLMENTYRDINIALANEFAKICDEIGVNVWDAIKIANKHPRV--NILNPGPGVGGHC 261          
BLAST of DY305368 vs. ExPASy Swiss-Prot
Match: UDG5_ECOLX (UDP-glucose 6-dehydrogenase OS=Escherichia coli GN=kfiD PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.238e-17
Identity = 71/254 (27.95%), Postives = 118/254 (46.46%), Query Frame = 3
Query:   30 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSCFHKEILNLV 791
            EV   D    +++  N    PI +  ++  +     K L F     K+ +  +  +V + TPT           D +  E+  R + +++ +  I+V KSTVPV   + I++ L  N+      I+ +PEFL EG A+ D  +P R++IG       + AV   +      +P   +L T+   AE  KL +N +LA R++  N + +  E+ G N  Q+   V  D  IG  + N S G+GG C  K+   L+
Sbjct:   28 EVVAFDTHQKKVDLLNDKLSPIEDKEIENYLST---KILNFRATTNKYEAYKNANYVIIATPTNYDP--GSNYFDTSSVEAVIRDVTEINPN-AIMVVKSTVPVGFTKTIKEHLGINN------IIFSPEFLREGRALYDNLHPSRIIIGECSERAERLAVLFQEGAIKQNIP---VLFTDSTEAEAIKLFSNTYLAMRVAFFNELDSYAESFGLNTRQIIDGVCLDPRIGNYYNNPSFGYGGYCLPKDTKQLL 266          
BLAST of DY305368 vs. ExPASy Swiss-Prot
Match: UDG_SALTY (UDP-glucose 6-dehydrogenase OS=Salmonella typhimurium GN=udg PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.818e-17
Identity = 74/259 (28.57%), Postives = 117/259 (45.17%), Query Frame = 3
Query:   30 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPT----KTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSCFHKEILNLV 791
            +V  +DI  SR+   N    PI +  +   +K+    N+ F   ++K  +  +  +V + TPT    KT              ES  + +  ++ +  +++ KSTVPV  TA   +K  T N       I+ +PEFL EG A+ D   P R++IG +     + A    +      +P    L T+   AE  KL AN +LA R++  N + +  E  G N  Q+   V  D  IG  + N S G+GG C  K+   L+
Sbjct:   24 DVVALDIVPSRVELLNDRISPIVDKEIQQFLKE---DNIRFRATLDKFDAYQNADYVIIATPTDYDPKTNYFNTSSV------ESVMQDVISINPAAVMII-KSTVPVGFTAAMRQKFATEN-------IIFSPEFLREGKALYDNLYPSRIVIGEQSERAREFAALLQEGAIKQEIPT---LFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAETLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL 262          
BLAST of DY305368 vs. ExPASy Swiss-Prot
Match: EPSD1_RALSO (NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase OS=Ralstonia solanacearum GN=epsD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.232e-16
Identity = 71/255 (27.84%), Postives = 115/255 (45.10%), Query Frame = 3
Query:   30 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 764
            EV  VDI+   ++  N  ++ I EP LD +V+    +    +T   +    AD   ++V TP         K  DL+Y E+AAR IA V K   +VV +ST PV   E +   L+     + F          ++   PE +  G  +++L   DR++  G  TP+  +A + L +++       R + T+  +AE+ KL  NAF    I+  N +S +C+  G NV ++         +    L    G GG C
Sbjct:   34 EVIGVDINQHAVDTINQGRIHIVEPDLDMLVRAAVSQGYLRATTEPE---PADAFLIAVPTPFLDN-----KQPDLSYIEAAARAIAPVLKRGDLVVLESTSPVGATEQLSDWLSAQRPDLSFPHQQGEESDIRVAHCPERVLPGHVLRELVENDRII--GGMTPKCSEAAQRLYELFV----RGRCIVTDARTAEMCKLTENAFRDVNIAFANELSMICDEIGVNVWELISVANRHPRV--NILQPGPGVGGHC 272          
BLAST of DY305368 vs. ExPASy Swiss-Prot
Match: EPSD2_RALSO (NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase OS=Ralstonia solanacearum GN=epsD PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.221e-16
Identity = 70/255 (27.45%), Postives = 114/255 (44.71%), Query Frame = 3
Query:   30 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 764
            E+  VDI+   ++  N  ++ I EP LD +V+    +    +T   +    AD   ++V TP         K  DLTY E+AA+ IA V K   +VV +ST PV   E +   L+     + F          ++   PE +  G  +++L   DR++  G  TP   +A + L +++       R + T+  +AE+ KL  NAF    I+  N +S +C+  G NV ++         +    L    G GG C
Sbjct:   34 ELIGVDINQHAVDTINQARIHIVEPDLDMLVRAAVSQGYLRATTEPE---PADAFLIAVPTPFLED-----KQPDLTYIEAAAKAIAPVLKRGDLVVLESTSPVGATEQLSAWLSEQRSDLSFPHQLGEESDIRVAHCPERVLPGHVLRELVENDRII--GGMTPRCSQAAQRLYELFVR----GRCIVTDARTAEMCKLTENAFRDVNIAFANELSMICDEIGVNVWELISVANRHPRV--NILQPGPGVGGHC 272          
The following BLAST results are available for this feature:
BLAST of DY305368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
UDG_SHIFL5.890e-1829.96Putative UDP-glucose 6-dehydrogenase OS=Shigella f... [more]
UDG_ECOLI5.890e-1829.96UDP-glucose 6-dehydrogenase OS=Escherichia coli (s... [more]
UDG_ECOL65.890e-1829.96UDP-glucose 6-dehydrogenase OS=Escherichia coli O6... [more]
ALGD_AZOVI1.005e-1727.51GDP-mannose 6-dehydrogenase OS=Azotobacter vinelan... [more]
WECC_METM71.714e-1730.49UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
WECC_METMP2.238e-1730.08UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
UDG5_ECOLX2.238e-1727.95UDP-glucose 6-dehydrogenase OS=Escherichia coli GN... [more]
UDG_SALTY3.818e-1728.57UDP-glucose 6-dehydrogenase OS=Salmonella typhimur... [more]
EPSD1_RALSO3.232e-1627.84NDP-N-acetyl-D-galactosaminuronic acid dehydrogena... [more]
EPSD2_RALSO4.221e-1627.45NDP-N-acetyl-D-galactosaminuronic acid dehydrogena... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3CE10RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305368 ID=DY305368; Name=DY305368; organism=Citrus clementina; type=EST; length=1253bp
TGCCTAATTCGGCACGAGGCCCATCCATTGAAGTGGCTGTTGTTGATATC
TCTGTGTCTCGGATCAATGCCTGGAACAGTGACCAGCTCCCCATCTATGA
GCCTGGACTTGATGGTGTGGTAAAGCAGTGCCGAGGGAAGAACCTGTTCT
TCAGCACCGATGTTGAGAAGCATGTCTCTGAGGCTGATATTGTCTTTGTT
TCAGTCAATACCCCAACCAAAACTCAGGGTCTCGGTGCTGGCAAAGCTGC
AGATCTGACATACTGGGAGAGTGCTGCTCGTGTGATTGCCGATGTGTCAA
AGTCTGACAAAATTGTTGTTGAGAAATCAACAGTTCCTGTAAAAACTGCT
GAGGCAATTGAAAAAATTTTGACCCACAACAGCAAGGGAATCAAATTCCA
GATCCTTTCAAACCCGGAGTTTCTTGCTGAGGGAACTGCAATACAGGATC
TTTTTAACCCAGATCGGGTCCTTATCGGTGGTAGAGAAACGCCAGAAGGC
CAGAAAGCCGTCAAAGCCTTGAAGGATGTGTATGCACACTGGGTCCCAGA
AGACCGAATTTTGACCACCAACCTGTGGTCTGCAGAGCTTTCGAAGCTTG
CAGCCAATGCTTTCTTGGCACAGAGGATCTCATCTGTTAATGCCATGTCA
GCTCTCTGCGAGGCAACTGGAGCTAATGTCAGTCAGGTGGCATTTGCTGT
TGGTACAGACTCTANGATTGGGCCCAAATTCTTGAATGCTAGTGTTGGGT
TCGGTGGCTCCTGCTTCCACAAAGAAATTTTGAATCTGGTTTACATCTGC
AAGTGCAATGGCCTTCCAGAAGTGGCTGATTACTGGAAAACAAGTCATTA
AAATCAATGATTACCAAAAAACCCGTTTTGTGAACCCCGTAATTTCCTCA
TTGTTCCACCCGGTTTTCAACAAGAAAAATGGCCCTTCTGGGAATTTTCC
TTCCAAAAAAGGAACCGGGGGAACCCAAAAAAAACCCCCACCCTTTTATG
TTTGCCCAGGGGCTTTTTTGGGAAAACAAACCCTCCTTGAAATCATTAAC
GACCCCCAAGGGGCCCACCAAGAACCCAATATCCAAAGGGAACTCTTAAA
ATGAAAAACGATTTTTAAAGGGGGGACCCCTCCCCCCTTTTCTCCCCCCC
CCCCCCCTCTAAAAATTCCCCCCCAACCCACGGAGGAAAAAAAACAAAGG
TTATAGAACGCGGGGGGTTGCTATGGGGGAAGGAAGTACCCCCCACTTTT
TAT
back to top