DY305368

Overview
NameDY305368
Unique NameDY305368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1253
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305368 vs. ExPASy Swiss-Prot
Match: UDG_STRP6 (UDP-glucose 6-dehydrogenase OS=Streptococcus pyogenes serotype M6 GN=hasB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.451e-13
Identity = 67/271 (24.72%), Postives = 117/271 (43.17%), Query Frame = 3
Query:   30 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDR------ILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSCFHKEILNLVYICKCNGLPE 821
            EV +VDI  S+++  N+   PI +  ++  +K    K L     ++   +  +   V + TPT           D  + E+  + +  V+    +++ KST+P+    E  +K  T        +I+ +PEFL E  A+ D   P R+++   E    +  VKA  + +A  +          +L      AE  KL AN +LA R++  N +    E+   N   +   +  D  IG  + N S G+GG C  K+   L  +   N +P+
Sbjct:   24 EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS---KQLSIKATLDSKAAYKEAELVIIATPTNYNS--RINYFDTQHVETVIKEVLSVNSHATLII-KSTIPIGFITEMRQKFQTD-------RIIFSPEFLRESKALYDNLYPSRIIVSCEENDSPK--VKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYCLPKDTKQL--LANYNNIPQ 277          
BLAST of DY305368 vs. ExPASy Swiss-Prot
Match: UDG_STRP1 (UDP-glucose 6-dehydrogenase OS=Streptococcus pyogenes serotype M1 GN=hasB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.451e-13
Identity = 67/271 (24.72%), Postives = 117/271 (43.17%), Query Frame = 3
Query:   30 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDR------ILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSCFHKEILNLVYICKCNGLPE 821
            EV +VDI  S+++  N+   PI +  ++  +K    K L     ++   +  +   V + TPT           D  + E+  + +  V+    +++ KST+P+    E  +K  T        +I+ +PEFL E  A+ D   P R+++   E    +  VKA  + +A  +          +L      AE  KL AN +LA R++  N +    E+   N   +   +  D  IG  + N S G+GG C  K+   L  +   N +P+
Sbjct:   24 EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS---KQLSIKATLDSKAAYKEAELVIIATPTNYNS--RINYFDTQHVETVIKEVLSVNSHATLII-KSTIPIGFITEMRQKFQTD-------RIIFSPEFLRESKALYDNLYPSRIIVSCEENDSPK--VKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYCLPKDTKQL--LANYNNIPQ 277          
BLAST of DY305368 vs. ExPASy Swiss-Prot
Match: WECC_SALTY (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Salmonella typhimurium GN=wecC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.732e-13
Identity = 71/255 (27.84%), Postives = 104/255 (40.78%), Query Frame = 3
Query:   30 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 764
            +V  VDI+   ++  N  ++ I EP L  VVK         +T       EAD   ++V TP K          D+ Y E+AA+ IA V K   +V+ +ST PV   E +   L      + F           I   PE +  G  + +L   DRV+  G  TP       AL  ++     E   + TN  +AE+ KL  N+F    I+  N +S +C   G NV ++         +    L    G GG C
Sbjct:   28 QVIGVDINQHAVDIINRGEIHIVEPALGNVVKMAVEGGFLRATTTP---VEADAYLIAVPTPFK-----GDHDPDMAYVEAAAKSIAPVLKKGALVILESTSPVGATEQMAGWLAGMRTDLTFPQQAGEQADVNIAYCPERVLPGQVMVELIKNDRVI--GGMTPVCSARASALYKIFL----EGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICAEQGINVWELIRLANRHPRV--NILQPGPGVGGHC 266          
BLAST of DY305368 vs. ExPASy Swiss-Prot
Match: UDG_STRPN (UDP-glucose 6-dehydrogenase OS=Streptococcus pneumoniae GN=cap3A PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.698e-12
Identity = 71/257 (27.63%), Postives = 117/257 (45.53%), Query Frame = 3
Query:   30 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIG-GRETPEGQKAVKALKDVYAHWVPEDR--ILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSCFHKEILNL 788
            EV V+D+   ++ + N+ + PI +  ++  + + +  NL  S D   HV + D+ +  + TPT           D +  E+A +   + + +  IV+ KST+P   T E  EK  T        +I+ +PEFL E  A+ D   P R+++G   +  E  K      D+      ++   IL      AE++KL +N +LA R+   N +    E  G N   +   V  D  IG  + N S G+GG C  K+   L
Sbjct:   24 EVKVIDVIKDKVESINNRKSPIKDEAIEKYLVE-KELNLEASLD-PAHVYK-DVEYAIIATPTNYDV--DLNQFDTSSVEAAIKTCMEYNDTCTIVI-KSTIPEGYTKEVREKFNTD-------RIIFSPEFLRESKALYDNLYPSRIVVGTDLDDSELTKRAWQFADLLKGGAIKEEVPILVVAFNEAEVAKLFSNTYLATRVRYFNEIDTYSEVKGLNPKTIIDIVCYDPRIGSYYNNPSFGYGGYCLPKDTKQL 267          
The following BLAST results are available for this feature:
BLAST of DY305368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
UDG_STRP67.451e-1324.72UDP-glucose 6-dehydrogenase OS=Streptococcus pyoge... [more]
UDG_STRP17.451e-1324.72UDP-glucose 6-dehydrogenase OS=Streptococcus pyoge... [more]
WECC_SALTY9.732e-1327.84UDP-N-acetyl-D-mannosamine dehydrogenase OS=Salmon... [more]
UDG_STRPN3.698e-1227.63UDP-glucose 6-dehydrogenase OS=Streptococcus pneum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CE10RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305368 ID=DY305368; Name=DY305368; organism=Citrus clementina; type=EST; length=1253bp
TGCCTAATTCGGCACGAGGCCCATCCATTGAAGTGGCTGTTGTTGATATC
TCTGTGTCTCGGATCAATGCCTGGAACAGTGACCAGCTCCCCATCTATGA
GCCTGGACTTGATGGTGTGGTAAAGCAGTGCCGAGGGAAGAACCTGTTCT
TCAGCACCGATGTTGAGAAGCATGTCTCTGAGGCTGATATTGTCTTTGTT
TCAGTCAATACCCCAACCAAAACTCAGGGTCTCGGTGCTGGCAAAGCTGC
AGATCTGACATACTGGGAGAGTGCTGCTCGTGTGATTGCCGATGTGTCAA
AGTCTGACAAAATTGTTGTTGAGAAATCAACAGTTCCTGTAAAAACTGCT
GAGGCAATTGAAAAAATTTTGACCCACAACAGCAAGGGAATCAAATTCCA
GATCCTTTCAAACCCGGAGTTTCTTGCTGAGGGAACTGCAATACAGGATC
TTTTTAACCCAGATCGGGTCCTTATCGGTGGTAGAGAAACGCCAGAAGGC
CAGAAAGCCGTCAAAGCCTTGAAGGATGTGTATGCACACTGGGTCCCAGA
AGACCGAATTTTGACCACCAACCTGTGGTCTGCAGAGCTTTCGAAGCTTG
CAGCCAATGCTTTCTTGGCACAGAGGATCTCATCTGTTAATGCCATGTCA
GCTCTCTGCGAGGCAACTGGAGCTAATGTCAGTCAGGTGGCATTTGCTGT
TGGTACAGACTCTANGATTGGGCCCAAATTCTTGAATGCTAGTGTTGGGT
TCGGTGGCTCCTGCTTCCACAAAGAAATTTTGAATCTGGTTTACATCTGC
AAGTGCAATGGCCTTCCAGAAGTGGCTGATTACTGGAAAACAAGTCATTA
AAATCAATGATTACCAAAAAACCCGTTTTGTGAACCCCGTAATTTCCTCA
TTGTTCCACCCGGTTTTCAACAAGAAAAATGGCCCTTCTGGGAATTTTCC
TTCCAAAAAAGGAACCGGGGGAACCCAAAAAAAACCCCCACCCTTTTATG
TTTGCCCAGGGGCTTTTTTGGGAAAACAAACCCTCCTTGAAATCATTAAC
GACCCCCAAGGGGCCCACCAAGAACCCAATATCCAAAGGGAACTCTTAAA
ATGAAAAACGATTTTTAAAGGGGGGACCCCTCCCCCCTTTTCTCCCCCCC
CCCCCCCTCTAAAAATTCCCCCCCAACCCACGGAGGAAAAAAAACAAAGG
TTATAGAACGCGGGGGGTTGCTATGGGGGAAGGAAGTACCCCCCACTTTT
TAT
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