DY305369

Overview
NameDY305369
Unique NameDY305369
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1101
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY305369 vs. ExPASy Swiss-Prot
Match: ROCO4_DICDI (Probable serine/threonine-protein kinase roco4 OS=Dictyostelium discoideum GN=roco4 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.672e-11
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 2 
Query:  431 ATNNFSFENLIGKGGYAEVYKGRL-RNGQLVAIKRLTRGTAD------EIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHIVLELSPNGSLASLLYGMKEKLKWGIRYKIALGVTEGLLYL 778
            A N   +E  IGKGG+  V+KGRL ++  +VAIK L  G ++      E   +F  E+ IM++++HPN  KL G  +     +V+E  P G L   L      +KW ++ ++ L +  G+ Y+
Sbjct: 1022 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGL-MHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYM 1143
[Close]
BLAST of DY305369 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 7.672e-11
Identity = 49/160 (30.63%), Postives = 79/160 (49.38%), Query Frame = 2 
Query:  308 KLSIRRSSSMREGIDMPRNLFVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHIVLELSPNGSLASLL--YGMKEKLKWGIRYKIALGVTEGLLYLH 781
            +L   R  ++RE  ++  +   ++         FS  E++ ATN+F     IG+GGY  +Y G LR+ Q VAIK L   ++   + ++  E+ +++ + HPN   L+G   E G  +V E  P GSL   L        L W  R +IA  +   L++LH
Sbjct:  436 ELQTERDRALREAEELRSHAETSTLQLPQYFTDFSFSEIEEATNHFDSTLKIGEGGYGSIYVGLLRHTQ-VAIKMLNPNSSQGPV-EYQQEVDVLSKMRHPNIITLIGACPE-GWSLVYEYLPGGSLEDRLTCKDNSPPLSWQNRVRIATEICAALVFLH 592
The following BLAST results are available for this feature:
BLAST of DY305369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
ROCO4_DICDI7.672e-1133.33Probable serine/threonine-protein kinase roco4 OS=... [more]
PUB33_ARATH7.672e-1130.63U-box domain-containing protein 33 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CF02RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305369 ID=DY305369; Name=DY305369; organism=Citrus clementina; type=EST; length=1101bp
GATTTTAGTTTCTTTTTTGACTGAGATAAGAGGACGGGACAAAGAAACAG
AATTTAGAATGCTCTGTTCTCATCCCCTGTTTCTGGTCCAGATTTTATAA
TATCTGGACATGGAGAAGAAGGAAGATTCATGCTCGCCGGTTGGGGTTCT
TGAGGACTATTTTCGAAGCGAAGACTCCGAAACATGTTCTTCAAAAGAAC
CATGCTCTGAAACTAAGCCGGAATCCAAATCCAATTCTCGCTGGCATTTA
TTCTACGACTTATTCAGAAACAAATCGAAGAAATCATTAGTCACATTGTA
TCCCCTCAAGCTTTCAATAAGAAGAAGCAGTAGTATGAGAGAGGGCATTG
ATATGCCGAGGAATCTTTTTGTAAATTCCTACGATTCACAGTCTCCCCAG
AAGATTTTCTCCCTCTATGAGCTGCAATCCGCCACCAACAATTTCAGCTT
CGAAAATTTGATTGGAAAGGGAGGTTATGCTGAAGTTTACAAAGGGCGTT
TGAGAAATGGGCAGCTTGTGGCAATCAAACGGCTAACAAGAGGTACAGCA
GATGAGATTATAGCGGACTTTTTATCGGAGCTTGGGATTATGGCTCATGT
CGATCATCCTAATACTGCTAAGTTATTAGGATATGGGATTGAAGGAGGCA
TGCACATTGTTCTTGAATTGTCTCCTAATGGAAGCTTAGCTTCTCTCCTT
TATGGTATGAAGGAGAAACTGAAATGGGGTATCAGGTATAAGATTGCGTT
AGGGGTAACCGAAGGCTTACTTTATCTTCATGAGGGCTGTCAGAGGAGAA
TCATTCATAGAAATATTTAAGCTGCCAATATTTTGCTCACTGAAGACTTC
CAGCCTCAGATTTTGTGATTTTGGACTAACCAATTGGCTACCGGACCAAT
GGAATCCTCCCACAAAATCAAAAGTTGAAGGCACTTTTTGGCTATCTTGC
CTCCGGAATTCTTAATGCTGGGGAAAGTAAAAGAAAAAAACCCAACTTTC
TTTGCCTTTCGTGTATTACTTACTGGAATTTGGTACACAGAACCCCGAAA
CTTTTGAATTCTTCTCCCCCAAAACCCCCTTTTTTTATGGGGCAAGGGCC
C
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