DY305395

Overview
NameDY305395
Unique NameDY305395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1243
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305395 vs. ExPASy Swiss-Prot
Match: YI7H_SCHPO (Uncharacterized membrane protein C977.17 OS=Schizosaccharomyces pombe GN=SPAC977.17 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.047e-11
Identity = 76/300 (25.33%), Postives = 105/300 (35.00%), Query Frame = 2
Query:   32 SAKDYTDPPPEPLFD----------AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAA--------------EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVI-----YNKDK----AWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGF 832
            S++D T PP E + +           + L  W   R    E  A            +G   Q        G      L  AW FG M+ V  Y   GISGGH+NPAVT  L + RK    +  +Y+  Q  GA  G  L   +  S  T + GG +      +TG  L                E IGT VLV  +F+  D   S     +       +G  +  + +A    T   +NPAR LG  +      Y         W   W  W G   G       +  ++  G    L +
Sbjct:  272 SSQDITMPPNEIIAEESLDSGSDTETLYLNYWCKIRHFFREGFAEFLGTLVLVVFGVGSNLQATVTNGAGG--SFESLSFAWGFGCMLGV--YIAGGISGGHVNPAVTISLAIFRKFPWYKVPIYIFFQIWGAFFGGALAYGYHWSSITEFEGGKDIRTP--ATGGCLYTNPKPYVTWRNAFFDEFIGTAVLVGCLFAILDDTNSPPTQGMTAFI---VGLLIAAIGMALGYQTSFTLNPARDLGPRMFAWWIGYGPHSFHLYHWWWTWGAWGGTIGGGIAGGLIYDLVIFTGPESPLNY 562          
BLAST of DY305395 vs. ExPASy Swiss-Prot
Match: GLPF_SHIFL (Glycerol uptake facilitator protein OS=Shigella flexneri GN=glpF PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 4.047e-11
Identity = 59/222 (26.58%), Postives = 98/222 (44.14%), Query Frame = 2
Query:  233 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKA--------FQKSYYTRYGGGAN-ELADGYST--------GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQW------------LFWV---GPFIGAAIAAFYHQFIL 802
            + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA     LV          F+++++   G   + +LA  +ST            A E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  V      AW   W             F V    P +GA + AF ++ ++
Sbjct:   44 ISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFSPIVGAIVGAFAYRKLI 255          
BLAST of DY305395 vs. ExPASy Swiss-Prot
Match: AQP3_MOUSE (Aquaporin-3 OS=Mus musculus GN=Aqp3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11
Identity = 58/225 (25.78%), Postives = 89/225 (39.56%), Query Frame = 2
Query:  227 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGV----------------GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPI-------TGTGINPARSLG----------AAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 802
            G L I  AFG  + + +     +SG H+NPAVTF +    +   ++  +Y +AQ LGA  G G+V  F   Y   +    NEL      G                 G   + IGT  L+  V +  DP  +          P+P G   F V L  + I       +G  +NPAR  G           + ++   + W   W+  V P +G+    F +Q ++
Sbjct:   55 GFLTINLAFGFAVTLGILVAGQVSGAHLNPAVTFAMCFLAREPWIKLPIYALAQTLGAFLGAGIV--FGLYYDAIWAFANNELFVSGPNGTAGIFATYPSGHLDMVNGFFDQFIGTAALIVCVLAIVDPYNN----------PVPRGLEAFTVGLVVLVIGTSMGFNSGYAVNPARDFGPRLFTALAGWGSEVFTTGRHW--WWVPIVSPLLGSIAGVFVYQLMI 265          
BLAST of DY305395 vs. ExPASy Swiss-Prot
Match: GLPF_PSEAE (Glycerol uptake facilitator protein OS=Pseudomonas aeruginosa GN=glpF PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 6.904e-11
Identity = 50/175 (28.57%), Postives = 76/175 (43.43%), Query Frame = 2
Query:  221 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGAN---------ELADGYST--------GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLG 694
            G+  + I W  G  + + +Y +AG+SG H+NPAV+  L+L       +   Y+ AQ  GA     LV     S +  +    N          LA  +ST        G     E++ T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPAR  G
Sbjct:   43 GLWEISIIWGVG--VSMAIYLSAGVSGAHLNPAVSIALWLFAGFEGRKLPFYITAQVAGAFCAAALVYTLYSSLFIEFEQAQNIVRGSQDSLALASVFSTYPHPALSVGQAFLVEVVITAILMAVIMALTDDGNGLPRG---PLAPLLIGLLIAVIGSAMGPLTGFAMNPARDFG 212          
BLAST of DY305395 vs. ExPASy Swiss-Prot
Match: AQP9_HUMAN (Aquaporin-9 OS=Homo sapiens GN=AQP9 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.904e-11
Identity = 56/218 (25.69%), Postives = 90/218 (41.28%), Query Frame = 2
Query:  227 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGG--------------ANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVP-VLAPLPIGFAVFMVHLATIPITGTGINPARSL-----------GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 802
            G++ I   F   + + +Y   G+SGGHINPAV+  + L  ++   +   Y+ AQ LGA  G   V          + GG              A   A   S     A +++ T +L+  VF+  D    +R+   P  L P+ IG  + ++  +    +G  +NPAR L           G  V    +  W   W+  VGP +GA I    +  ++
Sbjct:   56 GVITINVGFSMAVAMAIYVAGGVSGGHINPAVSLAMCLFGRMKWFKLPFYVGAQFLGAFVGAATVFGIYYDGLMSFAGGKLLIVGENATAHIFATYPAPYLSLANAFADQVVATMILLIIVFAIFD----SRNLGAPRGLEPIAIGLLIIVIASSLGLNSGCAMNPARDLSPRLFTALAGWGFEVFRAGNNFW---WIPVVGPLVGAVIGGLIYVLVI 266          
BLAST of DY305395 vs. ExPASy Swiss-Prot
Match: SIP12_MAIZE (Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.017e-11
Identity = 44/177 (24.86%), Postives = 75/177 (42.37%), Query Frame = 2
Query:  260 MIFVLVYCTAGISGGHINPAVTFGLFLA--RKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAF 784
            ++FV       + G   NP      + A     SL    + + AQ  GA+ G   +     + Y    GG +   D ++   G  AE++ TFV+   V          +    P++    I      + L+    TG  +NPA + G A + N+   W+  +++W+ PFIGA +AA+
Sbjct:   57 LLFVFNILCDALGGASFNPTGVAAFYAAGVTSPSLFSIALRLPAQAAGAVGGALAISELMPAQYRHMLGGPSLKVDPHT---GAGAELVLTFVITLAVLLII-----VKGPRNPIIKTWMISICTLCLVLSGAAYTGPSMNPANAFGWAYVNNRHNTWEQFYVYWICPFIGAILAAW 225          
The following BLAST results are available for this feature:
BLAST of DY305395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
YI7H_SCHPO4.047e-1125.33Uncharacterized membrane protein C977.17 OS=Schizo... [more]
GLPF_SHIFL4.047e-1126.58Glycerol uptake facilitator protein OS=Shigella fl... [more]
AQP3_MOUSE5.286e-1125.78Aquaporin-3 OS=Mus musculus GN=Aqp3 PE=2 SV=1[more]
GLPF_PSEAE6.904e-1128.57Glycerol uptake facilitator protein OS=Pseudomonas... [more]
AQP9_HUMAN6.904e-1125.69Aquaporin-9 OS=Homo sapiens GN=AQP9 PE=1 SV=1[more]
SIP12_MAIZE9.017e-1124.86Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3DA09RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305395 ID=DY305395; Name=DY305395; organism=Citrus clementina; type=EST; length=1243bp
TGCCGAATTCGGCACGAGGCACGGCTCATATTCAGCCAAGGACTACACGG
ACCCACCGCCGGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCA
TTCTACAGAGCCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTA
CGTCACTGTCTTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCA
AGAACGTCGACGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCC
TTCGGTGGCATGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGG
TGGTCACATTAACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGG
TGTCGTTGGTCCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCT
ATCTCCGGTGTTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAG
GTACGGAGGTGGGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTG
GATTGGCCGCCGAGATCATCGGCACCTTTGTCTTGGTTTACACTGTCTTC
TCGGCCACTGATCCCAAGAGAAGCGCCAGAGACTCCCACGTTCCCGTTTT
GGCACCGCTCCCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAA
TCCCAATCACTGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGCT
GTTATTTACAACAAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGT
TGGACCCTTCATTGGTGCAGCAATTGCAGCTTTCTACCACCAATTCATCT
TGAGAGCTGGAGCTGTCAAGGCTCTTGGTTTCTTCAGGAGCCCATCCCGT
GTCTGAATTTAATTTTCTTCACAAGTGGATTATCCACATCTTCATGGGGT
TAATGAATTTAAATTGGAAAGAAAAAACGGGAAGGGAGTAAAAGTGTGTT
TAAGTTTCAAAAAGTGAAAAAGGAGGGGGGGTGGTGATTGGTGGCTTTTC
AGGGATTTGTAAGGCAAAAAGTTCCTTTAAAAAAAAGAGGGGGCTTTTTT
TGTAAAATCCCCCGGGGGGTTGTTTTTCAAGGCCACTTTTCCCTTAAAAA
TTCCCTTTTCTCCCCAAGGTTTTTCCGGGTCCCCTTTTTCAACCTTTTGG
GTTATATTTTTTTTCCCCCCGGAATGGGGGAAAATTATATTTAAATATAA
TTTAATATATATTAAATATAATAAGCGCCCCTTTTAAAAAGGG
back to top