DY305395

Overview
NameDY305395
Unique NameDY305395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1243
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305395 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 2.362e-27
Identity = 87/232 (37.50%), Postives = 120/232 (51.72%), Query Frame = 2
Query:  107 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGA---NELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYH 790
            RA +AEFI+            I Y   T  A         G++ IA   G  +FV V   A ISGGH+NPAVTFGL +  +++++  V Y +AQ LG+ +   L+K     Y T  GG A   + +A G  +  G+  EII TF LVYTV+ +A DPK+ +    +  +APL IG  V    LA  P +G  +NPARS G AV       +   W++WVGP IG  +A   +
Sbjct:   19 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDA----ALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLK-----YVT--GGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGD---FSGHWVYWVGPLIGGGLAGLIY 232          
BLAST of DY305395 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.362e-27
Identity = 80/240 (33.33%), Postives = 121/240 (50.42%), Query Frame = 2
Query:   83 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 802
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA+ Y+VAQ LGA++G  ++ +       R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARS   A++    + + + W++WVGP IGA + +  + F+L
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223          
BLAST of DY305395 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 2.362e-27
Identity = 82/240 (34.17%), Postives = 117/240 (48.75%), Query Frame = 2
Query:   83 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 802
            EL   +F RA++AEF+A            + + S               +L IA AFG  I  LV     +SG HINPAVT    +   VS +RA  Y+ AQ LGA++G  ++         R     N L +  + G  +  E+  T  LV  +F++TD +RS           L IGF+V + HL  I  TG  +NPARSL  AV+  K   +DD W+FW+GP +GA I +  + ++L
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPP-----------SVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEI-TPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAVIGSLLYNYLL 223          
BLAST of DY305395 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.029e-27
Identity = 81/240 (33.75%), Postives = 117/240 (48.75%), Query Frame = 2
Query:   83 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 802
            EL   +F RA++AEF+A            + + S               +L IA AFG  I +LV     +SG HINPAVT    +   VS +RA  Y+ AQ LGA++G  ++         R     N L +  + G  +  E+  T  LV  +F++TD +R            L IGF+V + HL  I  TG  +NPARSL  AV+  K   +DD W+FW+GP +GA I +  + ++L
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPP-----------SVLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEI-TPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRGDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAIIGSLLYNYLL 223          
BLAST of DY305395 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 5.262e-27
Identity = 85/234 (36.32%), Postives = 115/234 (49.15%), Query Frame = 2
Query:  107 RALIAEFIAXXXXXXXXXXXXIGYKSQT-----DPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYH 790
            +A +AEFIA            I Y   T     DPA         G++ IA A    +FV V   A ISGGH+NPAVTFGL +   ++++  ++Y VAQ LGA      V  F   Y T           G S   G+  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV       +   W++WVGP +G  +A   +
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPA---------GLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGA-----SVACFLLQYVTHGQAIPTHGVSGISEIEGVVMEIVITFALVYTVYATAADPKKGS----LGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGN---FAGNWVYWVGPLVGGGLAGLVY 231          
BLAST of DY305395 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.262e-27
Identity = 82/242 (33.88%), Postives = 123/242 (50.83%), Query Frame = 2
Query:   83 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGL----AAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQ 793
            E T+    +A +AEFI+            + +   T+        +G+    +A AFG  +FV V   A ISGGH+NPAVTFG F+   ++L+R ++Y +AQ LG++    ++K           GG    A G S GVG+      EI+ TF LVYTV+ +A DPK  +    +  +AP+ IGF V    LA    +G  +NPA + G AV+      W + W++W GP +G  IA   ++
Sbjct:   13 EATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTP--SGLVAAAVAHAFG--LFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFAT--------GGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGS----LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVV---SWTWTNHWVYWAGPLVGGGIAGLIYE 235          
BLAST of DY305395 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.975e-27
Identity = 79/240 (32.92%), Postives = 118/240 (49.17%), Query Frame = 2
Query:   83 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 802
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA++G  ++ +       R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARS   A++    + + + W++WVGP IG  + +  + F+L
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWTPGP-------LHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of DY305395 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.611e-26
Identity = 80/240 (33.33%), Postives = 116/240 (48.33%), Query Frame = 2
Query:   83 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 802
            E   +SF+RA+ AEF              +  K    PA          +L IA AFG ++  +V     +SG HINPAVTF   +  ++SL RA+ Y+ AQ LGA++G  ++     +   R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L IGF++ + HL  +  TG  +NPARS   AV+    + + + W++WVGP IG A+    + FIL
Sbjct:    3 EFRSFSFWRAVFAEFFGTMFYVFFGLGASL--KWAAGPAN---------VLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPA-AIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----SLAIGFSLTLGHLFGLYYTGASMNPARSFAPAVL---TRNFTNHWVYWVGPIIGGALGGLVYDFIL 223          
BLAST of DY305395 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 3.411e-26
Identity = 78/240 (32.50%), Postives = 118/240 (49.17%), Query Frame = 2
Query:   83 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 802
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  Y+ AQ LGA++G  ++ +       R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARS   A++    + + + W++WVGP IG  + +  + F+L
Sbjct:    1 ELRSASFWRAIFAEFFATLFYVFFG----LGSSLRWAPGP-------LHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFSNHWVYWVGPIIGGGLGSLLYDFLL 221          
BLAST of DY305395 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 3.411e-26
Identity = 78/240 (32.50%), Postives = 118/240 (49.17%), Query Frame = 2
Query:   83 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 802
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  Y+ AQ LGA++G  ++ +       R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARS   A++    + + + W++WVGP IG  + +  + F+L
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFSNHWVYWVGPIIGGGLGSLLYDFLL 223          
The following BLAST results are available for this feature:
BLAST of DY305395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
TIP21_ARATH2.362e-2737.50Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
MIP_SHEEP2.362e-2733.33Lens fiber major intrinsic protein OS=Ovis aries G... [more]
AQP2_MOUSE2.362e-2734.17Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
AQP2_RAT4.029e-2733.75Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
TIP23_MAIZE5.262e-2736.32Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP11_ARATH5.262e-2733.88Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
MIP_CANFA8.975e-2732.92Lens fiber major intrinsic protein OS=Canis famili... [more]
MIP_RANPI2.611e-2633.33Lens fiber major intrinsic protein OS=Rana pipiens... [more]
MIP_RAT3.411e-2632.50Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE3.411e-2632.50Lens fiber major intrinsic protein OS=Mus musculus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3DA09RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305395 ID=DY305395; Name=DY305395; organism=Citrus clementina; type=EST; length=1243bp
TGCCGAATTCGGCACGAGGCACGGCTCATATTCAGCCAAGGACTACACGG
ACCCACCGCCGGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCA
TTCTACAGAGCCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTA
CGTCACTGTCTTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCA
AGAACGTCGACGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCC
TTCGGTGGCATGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGG
TGGTCACATTAACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGG
TGTCGTTGGTCCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCT
ATCTCCGGTGTTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAG
GTACGGAGGTGGGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTG
GATTGGCCGCCGAGATCATCGGCACCTTTGTCTTGGTTTACACTGTCTTC
TCGGCCACTGATCCCAAGAGAAGCGCCAGAGACTCCCACGTTCCCGTTTT
GGCACCGCTCCCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAA
TCCCAATCACTGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGCT
GTTATTTACAACAAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGT
TGGACCCTTCATTGGTGCAGCAATTGCAGCTTTCTACCACCAATTCATCT
TGAGAGCTGGAGCTGTCAAGGCTCTTGGTTTCTTCAGGAGCCCATCCCGT
GTCTGAATTTAATTTTCTTCACAAGTGGATTATCCACATCTTCATGGGGT
TAATGAATTTAAATTGGAAAGAAAAAACGGGAAGGGAGTAAAAGTGTGTT
TAAGTTTCAAAAAGTGAAAAAGGAGGGGGGGTGGTGATTGGTGGCTTTTC
AGGGATTTGTAAGGCAAAAAGTTCCTTTAAAAAAAAGAGGGGGCTTTTTT
TGTAAAATCCCCCGGGGGGTTGTTTTTCAAGGCCACTTTTCCCTTAAAAA
TTCCCTTTTCTCCCCAAGGTTTTTCCGGGTCCCCTTTTTCAACCTTTTGG
GTTATATTTTTTTTCCCCCCGGAATGGGGGAAAATTATATTTAAATATAA
TTTAATATATATTAAATATAATAAGCGCCCCTTTTAAAAAGGG
back to top