DY306884

Overview
NameDY306884
Unique NameDY306884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1222
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9297 contig Ccv1_Contig9297:1..1222. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: P2C27_ARATH (Probable protein phosphatase 2C 27 OS=Arabidopsis thaliana GN=At2g33700 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.228e-28
Identity = 81/212 (38.21%), Postives = 124/212 (58.49%), Query Frame = 3
Query:    3 AADLLKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAIPVGDRLLVANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQ------YVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKP----IQDPEEAAKRLMQEAYQRGSADNLTCVVV 608
            AA  ++ N+   ++    F    K AI  A+   D EF   +++ +  +G+TA TA   G RL++AN GD RAV+ R G AI +S+DHKP+ T E+ RIE  GG V++ G   + G L+V+RA GD  +K        +  +PE+QE  +    EFLI+  DGLWDV++++ AV + +       DPE  ++ L++EA +R + DNLT +VV
Sbjct:  135 AAHFVRKNILRFIVEDSSFPLCVKKAIKSAFLKADYEFA-DDSSLDISSGTTALTAFIFGRRLIIANAGDCRAVLGRRGRAIELSKDHKPNCTAEKVRIEKLGG-VVYDG--YLNGQLSVARAIGDWHMKGPKGSACPLSPEPELQETDLSEDDEFLIMGCDGLWDVMSSQCAVTIARKELMIHNDPERCSRELVREALKRNTCDNLTVIVV 342          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: P2C30_ORYSJ (Probable protein phosphatase 2C 30 OS=Oryza sativa subsp. japonica GN=Os03g0268600 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.666e-28
Identity = 70/124 (56.45%), Postives = 88/124 (70.97%), Query Frame = 3
Query:  150 GSTASTAIPVGDRLLVANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQ-EEVIDSSLEFLILASDGLWDVVTNEEAVAMIK 518
            GSTA  A+     ++VAN GDSRAV+CRGG AI +S DHKPD+ DE +RI  AGG V++    RV G+LA+SRA GD  LK YV+ DPE++  E  D   EFLILASDGLWDVV+NE A  +++
Sbjct:  191 GSTAVVAVLGPRHVVVANCGDSRAVLCRGGAAIPLSCDHKPDRPDELERIHAAGGRVIFWDGARVFGMLAMSRAIGDSYLKPYVICDPEVRVMERKDGEDEFLILASDGLWDVVSNEVACNVVR 314          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: P2C06_ORYSJ (Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica GN=Os01g0583100 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 6.094e-28
Identity = 82/218 (37.61%), Postives = 115/218 (52.75%), Query Frame = 3
Query:   54 KFISDTKSAIADAYSHTDSEF----LKSENNQNRDAGSTASTAIPVGDRLLVANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIK-------------PIQDP----------EEAAKRLMQEAYQRGSADNLTCVVVPVLANQ 626
            +F    + A  D +S  D E      + E       GSTA  A+     ++VAN GDSRAV+CRG   + +S DHKP++ DE  RIE  GG V+    +RV GVLA+SR+ GDR LK +++  PEI         E L+LASDGLWDV++NEE   + +             P   P          E AA+ L + A Q+GS DN++ +VV + A++
Sbjct:  244 EFKKKWEQAFVDCFSRVDEEVGGNASRGEAVAPETVGSTAVVAVICSSHIIVANCGDSRAVLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPVPEITIVPRAKDDECLVLASDGLWDVMSNEEVCDVARKRILLWHKKNGTNPASAPRSGDSSDPAAEAAAECLSKLALQKGSKDNISVIVVDLKAHR 461          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: PPM1F_RAT (Protein phosphatase 1F OS=Rattus norvegicus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 7.959e-28
Identity = 75/226 (33.19%), Postives = 116/226 (51.33%), Query Frame = 3
Query:    3 AADLLKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAIPVGDRLLVANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMI-----KPIQDPEEAAKRLMQEAYQRGSADNLTCVVV----PVLANQGGPPFPGPA 653
            AA     ++ +N    P+ ++D  +A+ +A+ HTD  FL+    +   +G+T   A+  G  L VA  GDS+ ++ + G  + +   HKP++ DE+ RIE  GGFV     WRV G LAVSRA GD   K YV  + +     +    ++L+LA DG +DVV + E   ++     +        A+ L+  A  RGS DN+T +VV    P+   +GG    G A
Sbjct:  201 AARYASVHVHTNASHQPELLTDPAAALKEAFRHTDQMFLQKAKRERLQSGTTGVCALITGAALHVAWLGDSQVILVQQGQVVKLMEPHKPERQDEKSRIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGLEDYLLLACDGFFDVVPHHEIPGLVHGHLLRQKGSGMHVAEELVAVARDRGSHDNITVMVVFLRDPLELLEGGGQGAGGA 426          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: P2C37_ARATH (Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.039e-27
Identity = 77/167 (46.11%), Postives = 101/167 (60.48%), Query Frame = 3
Query:  150 GSTASTAIPVGDRLLVANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPI-------QDPE-------EAAKRLMQEAYQRGSADNLTCVVV 608
            GSTA  ++   ++++V+N GDSRAV+CR G AI +S DHKPD+ DE  RI+ AGG V++    RV GVLA+SRA GD  LK YV+ DPE+         E LILASDGLWDVV NE A  + +          D +       +AA  L + A  R S+DN++ VVV
Sbjct:  221 GSTAVVSVVTPEKIIVSNCGDSRAVLCRNGVAIPLSVDHKPDRPDELIRIQQAGGRVIYWDGARVLGVLAMSRAIGDNYLKPYVIPDPEVTVTDRTDEDECLILASDGLWDVVPNETACGVARMCLRGAGAGDDSDAAHNACSDAALLLTKLALARQSSDNVSVVVV 387          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: P2C75_ARATH (Probable protein phosphatase 2C 75 OS=Arabidopsis thaliana GN=AHG1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.358e-27
Identity = 66/119 (55.46%), Postives = 83/119 (69.75%), Query Frame = 3
Query:  147 AGSTASTAIPVGDRLLVANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEA 503
            +GSTA TA+   D ++VAN GDSRAV+CR G AI +S DHKPD+ DER RIE AGG V+     RV G+LA SRA GDR LK  V  +PE+     +S  E L+LASDGLWDV++++ A
Sbjct:  230 SGSTAVTAVLTHDHIIVANTGDSRAVLCRNGMAIPLSNDHKPDRPDERARIEAAGGRVLVVDGARVEGILATSRAIGDRYLKPMVAWEPEVTFMRRESGDECLVLASDGLWDVLSSQLA 348          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: P2C22_ARATH (Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.358e-27
Identity = 87/242 (35.95%), Postives = 132/242 (54.55%), Query Frame = 3
Query:    3 AADLLKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSEN-NQNRDAGSTASTAIPVGDRLLVANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQY-----------VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAV----AMIKPIQDPEEAAKRLMQEAYQRGSADNLTCVVVPVLANQGGPPFPGPA*TSLHSHRS 680
            AA+   H++   ++   +F S+    ++ A+  TD+ FL++ + + +  +G+TA  AI  G  L+VAN GD RAV+ R G AI +SRDHKP  + ER+RIE +GG V       + G L V+RA GD  ++             ++A+PE+    +    EFLI+  DG+WDV  ++ AV      ++   DP   +K L++EA +R SADN+T VVV +   Q  PP P      L  HRS
Sbjct:  140 AAEFACHHIPRYIVEDQEFPSEINKVLSSAFLQTDTAFLEACSLDGSLASGTTALAAILFGRSLVVANAGDCRAVLSRQGKAIEMSRDHKPMSSKERRRIEASGGHVF---DGYLNGQLNVARALGDFHMEGMKKKKDGSDCGPLIAEPELMTTKLTEEDEFLIIGCDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKELVEEALKRKSADNVTAVVVCL---QPQPP-PNLVAPRLRVHRS 374          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: PP2C1_YEAST (Protein phosphatase 2C homolog 1 OS=Saccharomyces cerevisiae GN=PTC1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.773e-27
Identity = 66/141 (46.81%), Postives = 91/141 (64.54%), Query Frame = 3
Query:  186 RLLVANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNLTCVVV 608
            +L  AN GDSR V+ R GN+I ++ DHK   T E QR+E AGG +M +   RV G+LAV+R+ GD+     VV  P      I S  +FLILA DGLWDV+ +++A  +IK I +P EAAK L++ A + G+ DN+T +VV
Sbjct:  142 KLYTANVGDSRIVLFRNGNSIRLTYDHKASDTLEMQRVEQAGGLIMKS---RVNGMLAVTRSLGDKFFDSLVVGSPFTTSVEITSEDKFLILACDGLWDVIDDQDACELIKDITEPNEAAKVLVRYALENGTTDNVTVMVV 279          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: P2C24_ARATH (Probable protein phosphatase 2C 24 OS=Arabidopsis thaliana GN=At2g29380 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.773e-27
Identity = 77/171 (45.03%), Postives = 104/171 (60.82%), Query Frame = 3
Query:  150 GSTASTAIPVGDRLLVANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVID-SSLEFLILASDGLWDVVTNEEAVAMIKPI----------QDP-------EEAAKRLMQEAYQRGSADNLTCVVV 608
            GSTA  ++   D+++VAN GDSRAV+CR G  + +S DHKPD+ DE  RIE AGG V++    RV GVLA+SRA GD  LK YV  +PE+   + D    + LILASDGLWDVV+NE A ++ +            +DP        EA+  L + A  R S+DN++ VV+
Sbjct:  190 GSTAVVSVITPDKIVVANCGDSRAVLCRNGKPVPLSTDHKPDRPDELDRIEGAGGRVIYWDCPRVLGVLAMSRAIGDNYLKPYVSCEPEV--TITDRRDDDCLILASDGLWDVVSNETACSVARMCLRGGGRRQDNEDPAISDKACTEASVLLTKLALARNSSDNVSVVVI 358          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: P2C43_ARATH (Probable protein phosphatase 2C 43 OS=Arabidopsis thaliana GN=At3g17250 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.316e-27
Identity = 73/197 (37.06%), Postives = 117/197 (59.39%), Query Frame = 3
Query:   57 FISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAIPVGDRLLVANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQY---------VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKP----IQDPEEAAKRLMQEAYQRGSADNLTCVVV 608
            F+ + +++  +AY   D   ++ E   +   G+TA TA+ +G  L+VAN GD RAV+CR G A+ +S DHK     ER+R+ED GG+  + G +  G  LAV+RA GD  +K++         +++DP+IQ+ ++    EFLI+  DG+WDV+T++ AV  ++       DP   A  L +EA +  S+DN+T VV+
Sbjct:  199 FLKELETSHREAYRLADLA-MEDERIVSSSCGTTALTALVIGRHLMVANVGDCRAVLCRKGKAVDMSFDHKSTFEPERRRVEDLGGY--FEGEYLYGD-LAVTRALGDWSIKRFSPLGESLSPLISDPDIQQMILTEEDEFLIMGCDGVWDVMTSQYAVTFVRQGLRRHGDPRRCAMELGREALRLDSSDNVTVVVI 391          
The following BLAST results are available for this feature:
BLAST of DY306884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
P2C27_ARATH1.228e-2838.21Probable protein phosphatase 2C 27 OS=Arabidopsis ... [more]
P2C30_ORYSJ4.666e-2856.45Probable protein phosphatase 2C 30 OS=Oryza sativa... [more]
P2C06_ORYSJ6.094e-2837.61Probable protein phosphatase 2C 6 OS=Oryza sativa ... [more]
PPM1F_RAT7.959e-2833.19Protein phosphatase 1F OS=Rattus norvegicus GN=Ppm... [more]
P2C37_ARATH1.039e-2746.11Protein phosphatase 2C 37 OS=Arabidopsis thaliana ... [more]
P2C75_ARATH1.358e-2755.46Probable protein phosphatase 2C 75 OS=Arabidopsis ... [more]
P2C22_ARATH1.358e-2735.95Probable protein phosphatase 2C 22 OS=Arabidopsis ... [more]
PP2C1_YEAST1.773e-2746.81Protein phosphatase 2C homolog 1 OS=Saccharomyces ... [more]
P2C24_ARATH1.773e-2745.03Probable protein phosphatase 2C 24 OS=Arabidopsis ... [more]
P2C43_ARATH2.316e-2737.06Probable protein phosphatase 2C 43 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CD01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306884 ID=DY306884; Name=DY306884; organism=Citrus clementina; type=EST; length=1222bp
GAGCTGCTGACCTTTTAAAACACAACCTCTTCAGCAATCTGATCAGGCAT
CCAAAGTTCATATCTGATACCAAATCGGCAATAGCTGATGCATACAGCCA
CACAGACTCGGAATTTCTGAAGTCAGAAAACAATCAAAACAGGGATGCTG
GATCTACTGCTTCCACTGCCATCCCTGTTGGTGATCGCTTACTTGTTGCA
AATGAGGGTGACTCCAGAGCTGTTATATGCAGGGGCGGTAATGCTATTGC
CGTATCGCGAGATCACAAACCAGACCAAACAGATGAGCGTCAACGGATTG
AGGATGCAGGAGGGTTTGTGATGTGGGCTGGAACTTGGAGAGTGGGAGGA
GTGCTTGCCGTTTCTCGCGCATTTGGTGACAGACTCTTGAAGCAGTATGT
TGTTGCTGATCCCGAAATTCAGGAGGAAGTTATTGACAGCTCCCTTGAGT
TTCTTATCCTTGCAAGTGATGGACTTTGGGATGTCGTCACAAATGAGGAA
GCTGTTGCGATGATCAAACCAATCCAGGATCCAGAGGAGGCAGCGAAGAG
GCTGATGCAGGAGGCATATCAGAGAGGCAGCGCAGACAACCTCACCTGTG
TCGTTGTTCCGGTCTTGGCCAATCAAGGTGGTCCACCCTTTCCCGGGCCC
GCATGAACATCCCTTCATAGCCACCGCTCTGCTTTTGTTCTCCACATCGG
GCACCCTTTCAGGGGGCCACAGGCTAGTAACCCTAGAAAAAATACAGTTC
CCTTGGACTTCTGAAATGAAAACAACCGCACCAAAAACCCTCCCCCCCGG
CGGTAAAGGGGTATAACCAAATAACCACCCTCTGGAAAAAAACGGGCCCG
CAAGTTAACATCCTCGTCCCCGCCCCCCCAAACGAACCCTAAAAGCGGGA
TGGAACCGCTGCTGTAAAAAAATGGGAAAGAACCTCCCCAAGATTGCATT
CACAAAACACAAAAAAAAAAAAACAACCCCAACATCCCTCTGCCCCACCG
CGGCCCAACCACCAACGCCCTCGCTCAAACTCTCTCTACGGGCCCCGACC
ACGCCGACCCTTCTCCCACCCAACAATACCCCTCTAGACACAACACCCCC
GCCCCACAAATTTCCTCTCAAGCCCCACAACGCACACCACCACCCCGCGG
ACGCCTCTGCCTCGGGCTCACTGCGCCCGCCCAGCACACGCCGCCCCCGG
TACGGTTCACCACTACCAAACA
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