EG026395

Overview
NameEG026395
Unique NameEG026395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.160e-31
Identity = 61/107 (57.01%), Postives = 77/107 (71.96%), Query Frame = 3
Query:   21 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 341
            V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG G +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L    + +S
Sbjct:  220 VISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.160e-31
Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 3
Query:   24 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 332
            +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR  GYG+ TNIINGG+ECG G N  V +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  200 ISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.515e-31
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 3
Query:   24 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 305
            +SFK+A+WFWMT Q  KPS H+VI   W PS  D  AGR PGYG+ TNI+NGG+ECG+G +D V NRIGF+  +CG FGI  G NLDC NQRP+
Sbjct:  236 VSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.979e-31
Identity = 55/94 (58.51%), Postives = 70/94 (74.47%), Query Frame = 3
Query:   24 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 305
            +SFK+A WFWMT Q PKPSCH V+  +W P+ ND  AGR+PGYG+ TNIINGG+ECG+G +  V +RIGF+  +C   G+  G NLDC NQRP+
Sbjct:  228 VSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.585e-31
Identity = 57/95 (60.00%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   21 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 305
            V++FK+AIWFWMT Q PKPSCH VI+ +W+PS  D  AGR+PGYG+ TNIINGG+ECG G +  V +RIGF+  +C   G+ PG NLDC NQR +
Sbjct:  217 VIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSF 311          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.409e-31
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 3
Query:   24 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 305
            +SFK+AIWFWMT Q  KPS H+VI   W PSA D +AGR+PGYG+ TNIINGGIECG+G ++ V +R+GF+  +C  FG+ PG NLDC+NQR +
Sbjct:  226 VSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.409e-31
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 3
Query:   21 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 332
            V+SFK+A WFWMT Q PKPSCH VI   W PS  D +AGRLPG+G+ TNIINGG+ECG G    V++RIGF+  +C    +  G+NLDC+NQRP+G  L+  ++
Sbjct:  211 VISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI 314          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.409e-31
Identity = 60/95 (63.16%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   21 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 305
            V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D  AGR+PGYG+ TNIINGGIECG G NDA  +RIG++  +C   G   G NLDC NQR +
Sbjct:  165 VVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 9.822e-31
Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   21 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 305
            ++SF++AIWFWMTAQ  KPSCH VII +W PS  D  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  156 IISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.283e-30
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 3
Query:   24 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 305
            +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A R PGYG+ TNIINGGIECG G N  V +RIGF+  +C    + PGDNLDC +QR +
Sbjct:  151 VSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
The following BLAST results are available for this feature:
BLAST of EG026395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI5_PHAVU1.160e-3157.01Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_GOSHI1.160e-3158.25Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI2_ORYSJ1.515e-3161.70Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_ORYSJ1.979e-3158.51Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_BRANA2.585e-3160.00Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIX_PEA4.409e-3160.64Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIB_VITVI4.409e-3155.77Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI8_ORYSJ4.409e-3163.16Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SOLCI9.822e-3157.89Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIB_SOLLC1.283e-3061.70Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3AD09ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026395 ID=EG026395; Name=EG026395; organism=Citrus clementina; type=EST; length=489bp
CGGGTGATAAAGAAGGACGAGTACTATCATTCAAGTCAGCAATCTGGTTC
TGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGA
CGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGAT
ACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCTACGGT
GGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTACCACTTTCTGTGG
CAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTCCAACCAACGGC
CTTATGGCCTTAATCTGATGGCACAATCTATGTGATCATCATGATCAACG
TTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGT
CACACTTGTAGGTGGACAACTAAACTGTTACGCTCTTATTGTAAGTAAAT
TAAATAAGACTGATCCAACATGGATCAATGAGTCTTCTC
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