EG026566

Overview
NameEG026566
Unique NameEG026566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig331 contig Ccv1_Contig331:63..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026566 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.748e-38
Identity = 98/235 (41.70%), Postives = 125/235 (53.19%), Query Frame = 3
Query:    6 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 593
            V  LV    FD  +K +    C G GFYT DAFI+A  S+  FG T      K+E+AAF A  +HETT              +CFV E +    YC+P   +PCA GK YYGRGPIQLT N NY  AG+AI  D +N+P+ ++ +  +SFKTA+W+WM               R+  SA +       G+G     ING  ECG     +V DRV  Y  YC+ FGVDPG NL+C
Sbjct:   80 VGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPK-DWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDC 313          
BLAST of EG026566 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.087e-38
Identity = 93/236 (39.41%), Postives = 124/236 (52.54%), Query Frame = 3
Query:    3 SVADLVTPEFFDGIK-NQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSALN---------------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 593
            +V  +V+ E F+ +  ++  A C  +GFYT DA ++A +++P+F  T      KREVAAF    +HETT              +CF EEI  T  YC P+ ++PCA  K Y+GRGPIQL+ N NY  AG AIG D LN+PE VA D V+SFKTALW+WM         H  +                 G+G     ING  ECG     +V +R+  Y  YC   G+  G NL+C
Sbjct:   85 AVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDC 320          
BLAST of EG026566 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.133e-37
Identity = 90/236 (38.14%), Postives = 123/236 (52.12%), Query Frame = 3
Query:    6 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD--------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSAL---------------NQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 593
            + +L++ E F+  + ++    C  +GFYT DAFI+A  S+P F  T      KRE+AAF A  +HETT               +C+  E++  + YC   P YPCA GK Y+GRGP+QL+ N NY   GRAIG D LN+P+ ++ D  ISFK+A W+WM         H+ +                 G+G     ING  ECG    AQV+DR+  Y  YC   GV  G NL+C
Sbjct:   52 LTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDC 287          
BLAST of EG026566 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.480e-37
Identity = 96/233 (41.20%), Postives = 122/233 (52.36%), Query Frame = 3
Query:   15 LVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD--------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 593
            L+T E FD  + ++    C  +GFYT DAFI+A  S+P F  T      KREVAAF A  +HETT               +C+  E++  + YC   P YPCA GK Y+GRGP+QLT N NY   GRAIG D LN+P+ +A D  ISFK+A W+WM                +  S  +Q      GFG     ING  ECG    A+V+DR+  Y  YC   GV  G NL+C
Sbjct:   75 LITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPAD-YCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDC 306          
BLAST of EG026566 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.480e-37
Identity = 90/236 (38.14%), Postives = 123/236 (52.12%), Query Frame = 3
Query:    6 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD--------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSAL---------------NQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 593
            + +L++ E F+  + ++    C  +GFYT DAFI+A  S+P F  T      KRE+AAF A  +HETT               +C+  E++  + YC   P YPCA GK Y+GRGP+QL+ N NY   GRAIG D LN+P+ ++ D  ISFK+A W+WM         H+ +                 G+G     ING  ECG    AQV+DR+  Y  YC   GV  G NL+C
Sbjct:   74 LTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDC 309          
BLAST of EG026566 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.933e-37
Identity = 91/236 (38.56%), Postives = 126/236 (53.39%), Query Frame = 3
Query:    3 SVADLVTPEFFDGIK-NQAPATCEGKGFYTRDAFISALSSYPEFGRT-DTK---REVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 593
            +++ L++   F+ I  ++    C  KGFYT +AFI+A  ++  FG T DT    +E+AAF A  +HETT              +C+  E      YC  + Q+PCA GK Y+GRGPIQ++ N NY  AG AIG + LN+P+ VA D V+SFKTALW+WM               R+  S  +       GFG     ING  EC   + A + +R+  Y  YC+  GVDPG NL+C
Sbjct:    4 NISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDC 239          
BLAST of EG026566 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.345e-37
Identity = 92/223 (41.26%), Postives = 126/223 (56.50%), Query Frame = 3
Query:    6 VADLVTPEFFDG-IKNQAPATCEGKG-FYTRDAFISALSSYPEFGRT-DT---KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYC 554
            +  +++   FD  +K++    C+GK  FY+ +AFI+A  S+  FG T DT   KRE+AAFFA  +HETT              +CF+ E      YCTP+ Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+W+WM               R+  SA ++      GFG     ING  ECG  + ++VQDR+  Y  YC
Sbjct:   78 IGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYC 300          
BLAST of EG026566 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.345e-37
Identity = 92/237 (38.82%), Postives = 124/237 (52.32%), Query Frame = 3
Query:    6 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKT--NPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSALN---------------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 593
            VA +V+   FD  + ++  A C  K FYT DAF++A +++P F  T      KREVAAF A  +HETT              +CF EE +    + YC  + Q+PCA GK YYGRGPIQ++ N NY  AG+AIG + L++P+ VA D  +SFKTA W+WM         H+ +                 G+G     ING  ECG    ++V DR+  Y  YC   GV  G NL+C
Sbjct:   79 VASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDC 315          
BLAST of EG026566 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.593e-37
Identity = 90/236 (38.14%), Postives = 126/236 (53.39%), Query Frame = 3
Query:    6 VADLVTPEFFDGI-KNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTP-QYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM--RYVHSALNQ-------------------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 593
            V+ +V+ + +  +  ++  A C  +GFYT  +F+ A + +P F  T      KREVAAF A ++HETT               C+ EEI+  + YC  T  Q+PC  GK Y+GRGPIQ++ N NY  AG+A+GFDGL +PE VA    I+F+TALW+WM  R    + +Q                   GFG     +NG  EC     A+V +R+  Y  YC+  GVD GPNL+C
Sbjct:   49 VSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDC 284          
BLAST of EG026566 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.385e-35
Identity = 91/222 (40.99%), Postives = 119/222 (53.60%), Query Frame = 3
Query:    6 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT--DT--KREVAAFFAHVTHETTDFCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALN------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 593
            V  +VT + F+  +KN+    C  KGFYT DAFI+A +S+P FG T  DT  K+E+AAFF   +HETT      +      YC         +G  +YGRGPIQLTG  NY  AG+AIG D +N+P+ VA D  +SFKTA+W+WM               ++  SA +       G+G     ING  ECG     QV+DR+  Y  YC    V PG NL+C
Sbjct:   19 VGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADGPFAGGYCFVREGNQMGSG--FYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDC 238          
The following BLAST results are available for this feature:
BLAST of EG026566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIX_PEA1.748e-3841.70Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI9_ORYSJ5.087e-3839.41Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_GOSHI1.133e-3738.14Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_THECC1.480e-3741.20Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI1_GOSHI1.480e-3738.14Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHID_SOLLC1.933e-3738.56Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI4_SOLTU7.345e-3741.26Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_ORYSJ7.345e-3738.82Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI10_ORYSJ9.593e-3738.14Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC1.385e-3540.99Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2CF04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026566 ID=EG026566; Name=EG026566; organism=Citrus clementina; type=EST; length=731bp
ACTCCGTAGCCGATCTTGTGACTCCGGAATTTTTTGACGGCATTAAGAAT
CAGGCTCCAGCAACTTGTGAAGGGAAGGGGTTCTATACAAGAGATGCATT
TATTAGTGCTCTCAGTTCATATCCTGAATTCGGTAGAACTGATACTAAGC
GTGAAGTTGCCGCATTTTTTGCCCATGTCACTCATGAAACAACAGATTTT
TGCTTCGTAGAAGAGATTAGTAAGACAAATCCTTATTGTACACCGACTCC
TCAATATCCATGTGCCAATGGTAAATTCTACTATGGCCGGGGACCGATTC
AGCTCACCGGAAACGGAAACTACATAGATGCCGGAAGGGCCATCGGTTTC
GACGGTCTGAACTCTCCGGAAACGGTGGCCAGGGACCGTGTCATATCTTT
CAAGACTGCTTTGTGGTATTGGATGAGATACGTGCACTCAGCACTAAACC
AAGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGAATGCGGC
GGCCAAAACCGTGCACAAGTTCAGGATCGCGTTAGGCGTTACACTGATTA
TTGCAAAAGATTTGGTGTTGATCCTGGACCAAATCTCGAGTGCTGATTAG
ATATTTGGTATGAAAATGTTACACTATGTGTATTATATTATATCACAGTA
AGCCAGAGTTATTCCAAACAACTTTCTTTGTTTGGTAACTCTGATGGAAT
AATTTTTGTGTACCTGATCATAAAATAAAGA
back to top