EG026566

Overview
NameEG026566
Unique NameEG026566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig331 contig Ccv1_Contig331:63..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026566 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 82/234 (35.04%), Postives = 114/234 (48.72%), Query Frame = 3
Query:    3 SVADLVTPEFFDGIKN-QAPATCEGKGFYTRDAFISALSSYPEFGR----TDTKREVAAFFAHVTHETTD---------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGF--DGLNSPETVARDRVISFKTALWYWMRY-------------------VHSALNQ--GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 593
            +   +VT E F+ + + +    C  KGFYT DAFI+A +S+P FG     T  K+E+AAFF   +HET           +CFV++I +++ Y               YGRGPIQLT   NY  AG+ IG   + +N+P+ VA D +ISFKTA+W+WM                       +A N+  G+G     ING  ECG       + R+  Y  YC    V  G NL+C
Sbjct:   26 NAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGGSAGTFTGGYCFVKQIEQSDRY---------------YGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDC 244          
BLAST of EG026566 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.813e-27
Identity = 81/236 (34.32%), Postives = 111/236 (47.03%), Query Frame = 3
Query:    6 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSALNQ---------------GFGETIRKINGPAECG-GQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 593
            V  ++T   F+  + ++    C+G  FYT DAFI A   +P FG T      +RE+AAFF   +HETT              +C V EI+ ++P               YYGRGPIQLT   NY  AG A+G D +N+P+ V+ D V++F+TA+W+WM         H  +                 G+G     ING  ECG G +    +DRV  Y  YC  F V  G N+ C
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDPP--------------YYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIAC 247          
BLAST of EG026566 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.131e-24
Identity = 71/183 (38.80%), Postives = 92/183 (50.27%), Query Frame = 3
Query:   75 KGFYTRDAFISALSSYPEF---GRTDT-KREVAAFFAHVTHETTDFCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTD 548
            +GFYT DAFI+A  S+P F   G TD  KREVAAF A  +HETT                P   Y   +   Y+GRGPIQ++ N NY  AG+AIG D L +P+ V  D  + FKTALW+WM               R+  S+ ++      G+G     I+G  ECG    + V DR+  Y D
Sbjct:   17 RGFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTG----------GWPTAPDGPYELGSTSDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYKD 189          
BLAST of EG026566 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.539e-23
Identity = 78/231 (33.77%), Postives = 111/231 (48.05%), Query Frame = 3
Query:   15 LVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGR----TDTKREVAAFFAHVTHETTD------------FCFVEEISKT-NPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRY-------------VHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC*LDIWYEN 617
            +VT   FD + +     C  +GFY+  +F+ A  S+P FG        KREVAAF AH++  T+              C +   + T N +CT +  +PCA GK Y  RGPIQLT N NY  AG+AIG D + +P+ V +D +ISFKTALW+WM                +SA N+   + +         G  + A     +  Y  YC   GV  G +L+     W++N
Sbjct:  133 VVTEPLFDQMFSHRK-DCPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVENPHAWGLCHINTTTVTENDFCTSS-DWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVLNANSAANRIPNKGVIGNIISRAFGHDDFAVRSSSIGFYKRYCDMLGVSYGHDLK----YWFDN 357          
BLAST of EG026566 vs. ExPASy Swiss-Prot
Match: IAMY_COILA (Alpha-amylase inhibitor/endochitinase (Fragments) OS=Coix lachryma-jobi PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.675e-22
Identity = 62/141 (43.97%), Postives = 77/141 (54.61%), Query Frame = 3
Query:  168 FAHVTHETTDFCFVEEISKTNPYCTPTP-QYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNL 587
            FAHVTHET +          N YC P+  Q PCA GK YYGRGPIQ++ N NY  AGRAIG DGL +P+ VA+D +  +KTAL +                   +NG     G + A   + V  Y  YC++ GVDPGPNL
Sbjct:   24 FAHVTHETGN----------NAYCDPSKTQKPCAAGKKYYGRGPIQISXNYNYGPAGRAIGMDGLGNPDRVAQDALDDYKTALXF------------------LVNGEEAVPGLSAA---NAVSYYRQYCQQLGVDPGPNL 133          
BLAST of EG026566 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 71/224 (31.70%), Postives = 96/224 (42.86%), Query Frame = 3
Query:    6 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTD----TKREVAAFFAHVTHETTDFCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSALNQ---------------GFGETIRKINGPAEC--GGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 593
            ++D++    FD  +K +    C   GFYT +AFISA   +P+FG T      KRE+AAF    +HET  +                  +P A G   Y  G   +  N NY   G  +    L  PE V  D  I+FKTALW+WM         H+ + +               G+G     ING  EC  GG N A  ++R+  Y  YC   G   G NL+C
Sbjct:   85 LSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGW------------------WPAAQGD-QYDWGYCHM--NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNAN-ENRIGFYKTYCDSLGTTYGSNLDC 286          
The following BLAST results are available for this feature:
BLAST of EG026566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_SOLLC3.654e-2835.04Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI11_ORYSJ1.813e-2734.32Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_AVESA7.131e-2438.80Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI3.539e-2333.77Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
IAMY_COILA6.675e-2243.97Alpha-amylase inhibitor/endochitinase (Fragments) ... [more]
CHIB_POPTR1.539e-1831.70Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CF04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026566 ID=EG026566; Name=EG026566; organism=Citrus clementina; type=EST; length=731bp
ACTCCGTAGCCGATCTTGTGACTCCGGAATTTTTTGACGGCATTAAGAAT
CAGGCTCCAGCAACTTGTGAAGGGAAGGGGTTCTATACAAGAGATGCATT
TATTAGTGCTCTCAGTTCATATCCTGAATTCGGTAGAACTGATACTAAGC
GTGAAGTTGCCGCATTTTTTGCCCATGTCACTCATGAAACAACAGATTTT
TGCTTCGTAGAAGAGATTAGTAAGACAAATCCTTATTGTACACCGACTCC
TCAATATCCATGTGCCAATGGTAAATTCTACTATGGCCGGGGACCGATTC
AGCTCACCGGAAACGGAAACTACATAGATGCCGGAAGGGCCATCGGTTTC
GACGGTCTGAACTCTCCGGAAACGGTGGCCAGGGACCGTGTCATATCTTT
CAAGACTGCTTTGTGGTATTGGATGAGATACGTGCACTCAGCACTAAACC
AAGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGAATGCGGC
GGCCAAAACCGTGCACAAGTTCAGGATCGCGTTAGGCGTTACACTGATTA
TTGCAAAAGATTTGGTGTTGATCCTGGACCAAATCTCGAGTGCTGATTAG
ATATTTGGTATGAAAATGTTACACTATGTGTATTATATTATATCACAGTA
AGCCAGAGTTATTCCAAACAACTTTCTTTGTTTGGTAACTCTGATGGAAT
AATTTTTGTGTACCTGATCATAAAATAAAGA
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