EG026621

Overview
NameEG026621
Unique NameEG026621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:537..1094. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.945e-45
Identity = 78/130 (60.00%), Postives = 99/130 (76.15%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 392
            N NY  CG A+GVDLLNNPDL+ATD ++SFKSAIWFWMT Q PKPSCH+VI   W+PS  +  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  187 NYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.540e-45
Identity = 78/122 (63.93%), Postives = 97/122 (79.51%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 368
            N NY  CGEAL V+LL NPDL+ATD VLSFK+A+WFWMT Q PKPSCH+V+   W+PSA +  AGRLPGYG+ TN++NGG+ECG+G N  V +R+GFF  +CG  G+  G+NLDCYNQRP+G
Sbjct:  122 NYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.646e-44
Identity = 79/130 (60.77%), Postives = 96/130 (73.85%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 392
            N NY +CG A+GVDLLNNPDLL++DP +SFKSA WFWMT Q PKPSCH VII  W PS+ +  AGR  GYG+ TNIINGG+ECG+G N  V +RIGF+  +C   G+  G+NLDCYNQ P+G  +   SM
Sbjct:  173 NYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.790e-44
Identity = 79/133 (59.40%), Postives = 101/133 (75.94%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM*SS 401
            N NY +CG A+GVDLLN PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ +V A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G+NLDCY+Q P+G +L+   + +S
Sbjct:  195 NYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.170e-44
Identity = 78/127 (61.42%), Postives = 98/127 (77.17%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMA 383
            N NY   GEA+G DLLNNP+L+A+DPV+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ ++ AGR+PGYG+ TNIINGG+ECG G +D V NRIGF+  +C   GI  G NLDCY+QRP+   L A
Sbjct:  206 NYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.170e-44
Identity = 79/133 (59.40%), Postives = 100/133 (75.19%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM*SS 401
            N NY +CG A+GVDLLN PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ +V A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G+NLDCY+Q P+G +L    + +S
Sbjct:  194 NYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.394e-43
Identity = 77/130 (59.23%), Postives = 98/130 (75.38%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 392
            N NY  CG A+G +LLNNPDL+AT+ V+SFKSAIWFWMTAQ PKPSCH+VI   W PSA +  A RLPGYG+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PGDN+DC NQ+ +   L+ ++M
Sbjct:  205 NYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.820e-43
Identity = 74/121 (61.16%), Postives = 95/121 (78.51%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 365
            N NY +CG A+G DLLNNPDL++ DPV++FK+AIWFWMT Q PKPSCH VI+ +W+PS  +  AGR+PGYG+ TNIINGG+ECG+G +  V +RIGF+  +C   G+ PG NLDCYNQR +
Sbjct:  191 NYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSF 311          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 6.917e-43
Identity = 76/121 (62.81%), Postives = 91/121 (75.21%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 365
            N NY   G+A+G DLLNNPDL+A+D  +SFK+A WFWMT Q PKPSCH VI  +W PSA +  AGR+PGYG  TNIINGG+ECG G +D V +RIGF+  +C   G+  GDNLDCYNQRPY
Sbjct:  197 NYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.628e-42
Identity = 76/127 (59.84%), Postives = 93/127 (73.23%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLM 380
            N NY  CG+ L + LL  P+L+ TDP ++FK+A+WFWMT Q PKPSCH VI + W PSA +  AGR+PGYG+ TNIINGGIECGQGG N+A  NRIGF+ T+C   G   G NLDCY QRP+G  L+
Sbjct:  171 NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
The following BLAST results are available for this feature:
BLAST of EG026621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI2_SOLTU1.945e-4560.00Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_CARPA2.540e-4563.93Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_GOSHI1.646e-4460.77Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHIT_PHAVU4.790e-4459.40Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI9_ORYSJ8.170e-4461.42Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_PHAVU8.170e-4459.40Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI3_TOBAC1.394e-4359.23Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_BRANA1.820e-4361.16Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI3_ORYSJ6.917e-4362.81Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_POPTR2.628e-4259.84Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026621 ID=EG026621; Name=EG026621; organism=Citrus clementina; type=EST; length=558bp
GGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTG
AACAATCCAGACCTTCTTGCCACTGATCCAGTACTATCATTCAAGTCAGC
AATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAG
TCATTATCGACGAATGGAAACCATCAGCAATTGAAGTAAACGCCGGCCGG
CTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATG
TGGCCAAGGTGGGAATGACGCTGTACGCAACCGTATTGGGTTCTTTACCA
CTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTAC
AACCAACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGATCATC
ATGATCAAGGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAAAA
CTTTAGATGTCACAGTTGTAGGTGGACAACTAAATTATTCGTTTGTTACG
CTCTTATTGCAAGTAATTTAAATAAGACTGATCCAACATGGATCAATGAG
TCTTCTCC
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