EH406061

Overview
NameEH406061
Unique NameEH406061
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDH_MYCTU (Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis GN=icd PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.357e-26
Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 306
            AHGTVT HYR +Q G  TSTN IASIFAW+RGL HR KLD    ++DF  KLE+  + TVESGKMTKDLA++I       + +LN+EEF+DA+A++L   L+
Sbjct:  311 AHGTVTRHYRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEVIDFAHKLESVVIATVESGKMTKDLAILIG----PEQDWLNSEEFLDAIADNLEKELA 408          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDH_MYCBO (Isocitrate dehydrogenase [NADP] OS=Mycobacterium bovis GN=icd PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.357e-26
Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 306
            AHGTVT HYR +Q G  TSTN IASIFAW+RGL HR KLD    ++DF  KLE+  + TVESGKMTKDLA++I       + +LN+EEF+DA+A++L   L+
Sbjct:  311 AHGTVTRHYRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEVIDFAHKLESVVIATVESGKMTKDLAILIG----PEQDWLNSEEFLDAIADNLEKELA 408          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDH1_CANTR (Isocitrate dehydrogenase [NADP], mitochondrial OS=Candida tropicalis GN=IDP1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.103e-24
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGK-MTKDLALIIHGSKMTREHYLNTEEFIDAVANDLR 294
            AHGTVT HYR HQ+G ETSTNSIASIFAW+RGLA R KLD    ++DF  KLE A + TVE  + MTKDLAL +   K  R  Y+ T EF+DAVA+ L+
Sbjct:  333 AHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLAQRGKLDETPDVVDFASKLEQATIDTVEVDRIMTKDLALAM--GKTDRSAYVTTTEFLDAVADRLK 429          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDHC_YEAST (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Saccharomyces cerevisiae GN=IDP2 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 5.359e-24
Identity = 61/106 (57.55%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTV-ESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLSGKA 315
            AHGTVT H+R HQ+G ETSTNSIASIFAW+RG+  R KLDN   ++ F + LE+A V TV E G MTKDLALI+   K  R  Y+ TEEFIDAV + L+      A
Sbjct:  308 AHGTVTRHFRQHQQGKETSTNSIASIFAWTRGIIQRGKLDNTPDVVKFGQILESATVNTVQEDGIMTKDLALIL--GKSERSAYVTTEEFIDAVESRLKKEFEAAA 411          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDH2_CANTR (Isocitrate dehydrogenase [NADP] peroxisomal OS=Candida tropicalis GN=IDP2 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 4.537e-23
Identity = 59/102 (57.84%), Postives = 68/102 (66.67%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGK-MTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARL 303
            AHGTVT HYR HQ+G ETSTNSIASI+AW+RGL  R KLD+   ++ F E+LE A + TV     MTKDLAL     K  R  Y+ TEEFID VAN L   L
Sbjct:  310 AHGTVTRHYRQHQQGKETSTNSIASIYAWTRGLIQRGKLDDTPEVVKFAEELEKAVIETVSKDNIMTKDLALT--QGKTDRSSYVTTEEFIDGVANRLNKNL 409          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDHH_YEAST (Isocitrate dehydrogenase [NADP] OS=Saccharomyces cerevisiae GN=IDP3 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.320e-22
Identity = 57/99 (57.58%), Postives = 69/99 (69.70%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVE-SGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLR 294
            AHGTVT H+R HQ+G ETSTNSIASIFAW+R +  R KLDN   ++ F   LE A + TV+  GKMTKDLAL++   K  R  Y+ TEEFID VA  L+
Sbjct:  308 AHGTVTRHFRKHQRGEETSTNSIASIFAWTRAIIQRGKLDNTDDVIKFGNLLEKATLDTVQVGGKMTKDLALML--GKTNRSSYVTTEEFIDEVAKRLQ 404          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDHP_SCHPO (Probable isocitrate dehydrogenase [NADP], mitochondrial OS=Schizosaccharomyces pombe GN=idp1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.252e-22
Identity = 56/101 (55.45%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARL 303
            AHGTV  HY  + KG +TSTNSIASIFAW+RGLAHR +LD N RL+ F   LE ACV  VE G MTKDL L+      +   Y++T EF+DAV ++L + L
Sbjct:  318 AHGTVQRHYMQYLKGKKTSTNSIASIFAWTRGLAHRGRLDGNERLVKFANALEHACVRCVEKGIMTKDLYLL----SKSPNGYVDTFEFLDAVKSELDSEL 414          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDHP_YEAST (Isocitrate dehydrogenase [NADP], mitochondrial OS=Saccharomyces cerevisiae GN=IDP1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.551e-22
Identity = 58/102 (56.86%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTV-ESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARL 303
            AHGTVT HYR +QKG ETSTNSIASIFAWSRGL  R +LDN   L  F   LE+A + TV + G MTKDLAL    ++  R  Y+ TEEF+DAV   L+  +
Sbjct:  325 AHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDGIMTKDLALACGNNE--RSAYVTTEEFLDAVEKRLQKEI 424          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDHP_ASPNG (Isocitrate dehydrogenase [NADP], mitochondrial OS=Aspergillus niger GN=icdA PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.551e-22
Identity = 56/105 (53.33%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTV-ESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLSGK 312
            AHGTVT HYR HQKG ETSTN IASIFAW+RGL  R KLD    ++ F E+LE AC+  V + G MTKDLAL     +  RE ++ T E++ AV   L+A L  +
Sbjct:  395 AHGTVTRHYREHQKGRETSTNPIASIFAWTRGLIQRGKLDETPDVVTFAEELERACIEVVNDEGIMTKDLALAC--GRKEREAWVTTREYMAAVERRLKANLKSR 497          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDH_SPHYA (Isocitrate dehydrogenase [NADP] OS=Sphingomonas yanoikuyae GN=icd PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.459e-21
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 306
            AHGTVT HYR HQ+G  TSTN IASIFAW++GL+ R K D+   ++ F E LE  C+ TVE G MTKDLAL+I       + ++ TE+F +A+  +L A ++
Sbjct:  306 AHGTVTRHYRQHQQGKATSTNPIASIFAWTQGLSFRGKFDDTPDVVKFAETLEQVCIKTVEGGAMTKDLALLIGPD----QAWMTTEQFFEAIRVNLEAEMA 403          
The following BLAST results are available for this feature:
BLAST of EH406061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDH_MYCTU3.357e-2656.86Isocitrate dehydrogenase [NADP] OS=Mycobacterium t... [more]
IDH_MYCBO3.357e-2656.86Isocitrate dehydrogenase [NADP] OS=Mycobacterium b... [more]
IDH1_CANTR4.103e-2460.61Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHC_YEAST5.359e-2457.55Isocitrate dehydrogenase [NADP] cytoplasmic OS=Sac... [more]
IDH2_CANTR4.537e-2357.84Isocitrate dehydrogenase [NADP] peroxisomal OS=Can... [more]
IDHH_YEAST1.320e-2257.58Isocitrate dehydrogenase [NADP] OS=Saccharomyces c... [more]
IDHP_SCHPO2.252e-2255.45Probable isocitrate dehydrogenase [NADP], mitochon... [more]
IDHP_YEAST6.551e-2256.86Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_ASPNG6.551e-2253.33Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDH_SPHYA1.459e-2150.00Isocitrate dehydrogenase [NADP] OS=Sphingomonas ya... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3AE06ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406061 ID=EH406061; Name=EH406061; organism=Citrus clementina; type=EST; length=551bp
GCCCATGGAACAGTCACCCTACACTACAGAGTTCATCAGAAAGGTGGTGA
AACTAGCACAAACAGCATAGCCTCCATCTTTGCTTGGTCACGAGGGCTTG
CACATAGGGCGAAGTTGGACAACAATGCTAGGCTATTGGATTTTACTGAG
AAACTAGAAGCTGCATGTGTTGGCACTGTTGAATCTGGGAAGATGACCAA
GGATCTTGCACTTATTATCCATGGATCTAAGATGACTAGGGAACACTATC
TGAATACTGAAGAGTTCATTGATGCTGTGGCCAACGATCTAAGAGCAAGA
CTCTCTGGCAAAGCATGATTTTTTTGTTGCAGATGCTACACATTCAAAGG
TAAAGACTTGGGGAAGCTTCCCTTGGTTATCTTTTTCATATTATGCTGAG
AAGAAATAATTGAAGAGGGGAAAATTGGGGATTGGGATTTGGTTCTCTTC
TAATTCCTACAATAGACTGCTTTCCTGTTGATCGACAAACTCTCATTTTC
ATGCAAGCAAATGTCTTGAACATGGCTTGTTATAAACAAAACTATTGCTG
A
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