EH406135

Overview
NameEH406135
Unique NameEH406135
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_JULON (60S ribosomal protein L38 OS=Julodis onopordi GN=RpL38 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.476e-16
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 2
Query:    5 ARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            ARRKDA+SVKIK++ D VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:   15 ARRKDAKSVKIKKNPDNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_SPOFR (60S ribosomal protein L38 OS=Spodoptera frugiperda GN=RpL38 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.970e-16
Identity = 38/55 (69.09%), Postives = 49/55 (89.09%), Query Frame = 2
Query:    5 ARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            ARRKDA+SVKIK+++  VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:   15 ARRKDAKSVKIKKNQQNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_ORNPR (60S ribosomal protein L38 OS=Ornithodoros parkeri GN=RpL38 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.970e-16
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 2
Query:    2 TARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            TARRKDA+SV+IK++ D V KFKVRCSKYLYT+ V + EKA+KLKQSLPPGL V++L
Sbjct:   14 TARRKDAKSVRIKKNPDNVTKFKVRCSKYLYTIVVKEKEKAEKLKQSLPPGLQVKEL 70          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_MACHI (60S ribosomal protein L38 OS=Maconellicoccus hirsutus GN=RpL38 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.970e-16
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 2
Query:    5 ARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL*RRSSNS 190
            ARRKDA+SVKIK++   VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++  R S +
Sbjct:   15 ARRKDAKSVKIKKNPTNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEIKCRKSKT 76          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_ARGMO (60S ribosomal protein L38 OS=Argas monolakensis GN=RpL38 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.970e-16
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 2
Query:    2 TARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            TARRKDA+SV+IK++ D V KFKVRCSKYLYT+ V + EKA+KLKQSLPPGL V++L
Sbjct:   14 TARRKDAKSVRIKKNPDNVTKFKVRCSKYLYTIVVKEKEKAEKLKQSLPPGLQVKEL 70          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_TIMBA (60S ribosomal protein L38 OS=Timarcha balearica GN=RpL38 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.302e-15
Identity = 38/56 (67.86%), Postives = 49/56 (87.50%), Query Frame = 2
Query:    2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            TARRKDA+SVKIK++ +  KFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:   14 TARRKDAKSVKIKKNPENTKFKVRCSRFLYTLVITDREKAEKLKQSLPPGLQVKEV 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_PLUXY (60S ribosomal protein L38 OS=Plutella xylostella GN=RpL38 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.302e-15
Identity = 38/55 (69.09%), Postives = 49/55 (89.09%), Query Frame = 2
Query:    5 ARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            ARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:   15 ARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_BOMMO (60S ribosomal protein L38 OS=Bombyx mori GN=RpL38 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.302e-15
Identity = 38/55 (69.09%), Postives = 49/55 (89.09%), Query Frame = 2
Query:    5 ARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            ARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:   15 ARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_AEDAE (60S ribosomal protein L38 OS=Aedes aegypti GN=RpL38 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.302e-15
Identity = 38/55 (69.09%), Postives = 48/55 (87.27%), Query Frame = 2
Query:    5 ARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            ARRKDAR+VKIK++ +  KFK+RCS+YLYTL V D EKA+KLKQSLPPGL V+++
Sbjct:   15 ARRKDARAVKIKKNENNTKFKIRCSRYLYTLVVQDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_ANOGA (60S ribosomal protein L38 OS=Anopheles gambiae GN=RpL38 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.901e-15
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 2
Query:    5 ARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            ARRKDAR+VKIK++    KFK+RCS+YLYTL V D EKA+KLKQSLPPGL V+++
Sbjct:   15 ARRKDARAVKIKKNETNTKFKIRCSRYLYTLVVKDMEKAEKLKQSLPPGLQVKEV 69          
The following BLAST results are available for this feature:
BLAST of EH406135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RL38_JULON4.476e-1670.9160S ribosomal protein L38 OS=Julodis onopordi GN=R... [more]
RL38_SPOFR9.970e-1669.0960S ribosomal protein L38 OS=Spodoptera frugiperda... [more]
RL38_ORNPR9.970e-1671.9360S ribosomal protein L38 OS=Ornithodoros parkeri ... [more]
RL38_MACHI9.970e-1664.5260S ribosomal protein L38 OS=Maconellicoccus hirsu... [more]
RL38_ARGMO9.970e-1671.9360S ribosomal protein L38 OS=Argas monolakensis GN... [more]
RL38_TIMBA1.302e-1567.8660S ribosomal protein L38 OS=Timarcha balearica GN... [more]
RL38_PLUXY1.302e-1569.0960S ribosomal protein L38 OS=Plutella xylostella G... [more]
RL38_BOMMO1.302e-1569.0960S ribosomal protein L38 OS=Bombyx mori GN=RpL38 ... [more]
RL38_AEDAE1.302e-1569.0960S ribosomal protein L38 OS=Aedes aegypti GN=RpL3... [more]
RL38_ANOGA2.901e-1569.0960S ribosomal protein L38 OS=Anopheles gambiae GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AA03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406135 ID=EH406135; Name=EH406135; organism=Citrus clementina; type=EST; length=462bp
TACTGCAAGAAGGAAGGATGCCCGTTCAGTCAAAATCAAGAGGAGCAGGG
ATGTTGTTAAGTTTAAGGTTCGATGCTCAAAGTACCTTTACACACTCTGT
GTTTTTGACTCCGAGAAAGCTGACAAGTTGAAGCAATCTCTTCCTCCAGG
TTTGAGCGTCCAGGACCTGTGAAGAAGATCTTCTAACTCTTGGGTGGGAT
CAGAAGTTGATGAAATTTGTTTCATACTTTCTACCTCGAAATTGTTAGGC
CTTACAAATTTTGATGAAGACTCAAGTTTGATAAATGTTATTGTTTTTTT
ATTAGTTTTCTTGGGAATTTTCTCCAAATATTTCGTTTGCATGAGTTTGA
GTTGTATATCACCTTAGTGTTTTTTTATCGATCAAGTCGGAACATGTCTA
TTTATTTTGTGGCCTAATTATTATATTTCTTATTTATTAGTAATCTAAGC
ACAAGTCCCCCG
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