EH406143

Overview
NameEH406143
Unique NameEH406143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length454
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig751 contig Ccv1_Contig751:97..550. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.197e-28
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  296 HETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.197e-28
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  296 HETADMNTFVWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA1_PHAVU (Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.197e-28
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  296 HETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.870e-28
Identity = 56/61 (91.80%), Postives = 60/61 (98.36%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETADINTFSWGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPYVVTSMIAETTI+WKP
Sbjct:  296 HETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIIWKP 356          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA1_SOYBN (Glutamine synthetase cytosolic isozyme 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.870e-28
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETADINTF WGVANRGAS+RVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  295 HETADINTFLWGVANRGASVRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 355          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.748e-28
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  296 HETADMNTFIWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLN12_ORYSJ (Glutamine synthetase cytosolic isozyme 1-2 OS=Oryza sativa subsp. japonica GN=GLN1-2 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.748e-28
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 182
            HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVT MIAETT+LWK
Sbjct:  296 HETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIAETTLLWK 355          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.748e-28
Identity = 55/61 (90.16%), Postives = 60/61 (98.36%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETADINTFSWGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPY+VTSMIAETTI+WKP
Sbjct:  296 HETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYIVTSMIAETTIIWKP 356          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 4.895e-28
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 179
            HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW
Sbjct:  296 HETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 4.895e-28
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 182
            HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVT MIA+TTILWK
Sbjct:  296 HETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIADTTILWK 355          
The following BLAST results are available for this feature:
BLAST of EH406143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GLNA_VIGAC2.197e-2895.08Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA2_SOYBN2.197e-2895.08Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLNA1_PHAVU2.197e-2895.08Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE... [more]
GLNA3_MAIZE2.870e-2891.80Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLNA1_SOYBN2.870e-2893.44Glutamine synthetase cytosolic isozyme 1 OS=Glycin... [more]
GLNA3_PHAVU3.748e-2893.44Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]
GLN12_ORYSJ3.748e-2895.00Glutamine synthetase cytosolic isozyme 1-2 OS=Oryz... [more]
GLN11_ORYSJ3.748e-2890.16Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLNA_LACSA4.895e-2898.31Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA5_MAIZE4.895e-2895.00Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AA10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406143 ID=EH406143; Name=EH406143; organism=Citrus clementina; type=EST; length=454bp
GACATGAAACTGCAGATATCAACACTTTCTCTTGGGGTGTCGCTAACAGA
GGTGCCTCCATTCGCGTTGGTCGTGACACTGAGAAAGAAGGAAAGGGATA
CTTTGAAGACAGAAGGCCAGCTTCAAACATGGACCCATATGTTGTGACTT
CAATGATCGCTGAAACCACCATTCTCTGGAAGCCTTAGAAAACAAACTTG
AGCATCGATGACGAAGAAGAAATCGAGGGAAAATGAAAGCTTAAATTGAA
CCCACCACAAAAATAATTCTTATGTTTTTATCTTTGTAATGTGTCTATGC
ATTTAAGTCTGTTGTTTGAACTTGTTCCTTGCCATTCAAAACTGTACTCC
GTTTCTCTTGTTCTTCATTCTTTGGGATGCTCGGTTGTGATTACTATATT
ATAGTTTAAAACTACTTCTCCTCTGTTTAAAAAATAAAGAAGATTTATAG
CGTA
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