EH406143

Overview
NameEH406143
Unique NameEH406143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length454
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig751 contig Ccv1_Contig751:97..550. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.925e-24
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 182
            HETA+I+TF WGVANRGAS+RVGRDTEK GKGYFEDRRPASNMDPYVVT+MIA+TTI+ K
Sbjct:  296 HETANISTFKWGVANRGASVRVGRDTEKAGKGYFEDRRPASNMDPYVVTAMIADTTIIGK 355          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.925e-24
Identity = 49/61 (80.33%), Postives = 56/61 (91.80%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETA I+ FSWGVANRG SIRVGRDTE +GKGY EDRRPASNMDPY+VTS++AETT+LW+P
Sbjct:  354 HETASIDQFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYIVTSLLAETTLLWEP 414          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 5.601e-24
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETA I+ FSWGVANRG SIRVGRDTE +GKGY EDRRPASNMDPY VT+++AETTILW+P
Sbjct:  358 HETASISDFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYTVTALLAETTILWEP 418          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_DUNSA (Glutamine synthetase (Fragment) OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.078e-17
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HET+ +N FSWGVANRG SIRVGR    E  GY+EDRRP+SN+DPYVVT ++ ETT+L
Sbjct:  177 HETSSMNDFSWGVANRGCSIRVGRMVPVEKCGYYEDRRPSSNLDPYVVTRLLVETTLL 234          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.131e-16
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HET+ ++ FSWGVANRG SIRVGR    E  GY+EDRRPASN+D YVVT +I ETTIL
Sbjct:  324 HETSSMSDFSWGVANRGCSIRVGRMVPVEKSGYYEDRRPASNLDAYVVTRLIVETTIL 381          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.929e-16
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 167
            HETA ++TFS GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  299 HETASMSTFSSGVANRGASIRIPRSVNKEGYGYFEDRRPASNIDPYLVTGIMCET 353          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_ASHGO (Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.520e-16
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 167
            HETA + TFS GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT +I ET
Sbjct:  296 HETASMATFSSGVANRGASIRIPRSVSKEGFGYFEDRRPASNIDPYLVTGIICET 350          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.520e-16
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 182
            HET  I+ FS GVANRGASIRV R    +G GY EDRRPASN+DPY VTS+IAETTIL K
Sbjct:  295 HETGHISNFSSGVANRGASIRVPRHVASQGYGYLEDRRPASNIDPYRVTSIIAETTILDK 354          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_EMENI (Glutamine synthetase OS=Emericella nidulans GN=glnA PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 9.576e-16
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 167
            HET +I+ FS+GVA+RG SIR+ R   K+GKGYFEDRRPASN DPY +T +IAET
Sbjct:  285 HETGNIDKFSYGVADRGGSIRIPRQVAKDGKGYFEDRRPASNADPYQITGIIAET 339          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_DEBHA (Glutamine synthetase OS=Debaryomyces hansenii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.251e-15
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 167
            HETA I  FS GVANRGAS+R+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  296 HETASIEGFSSGVANRGASVRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMVET 350          
The following BLAST results are available for this feature:
BLAST of EH406143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GLNA_NICPL1.925e-2485.00Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLNA2_ARATH1.925e-2480.33Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLNA2_HORVU5.601e-2480.33Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA_DUNSA5.078e-1767.24Glutamine synthetase (Fragment) OS=Dunaliella sali... [more]
GLNA1_CHLRE1.131e-1668.97Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA_KLULA1.929e-1670.91Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]
GLNA_ASHGO2.520e-1672.73Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE... [more]
GLNA_AGABI2.520e-1671.67Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]
GLNA_EMENI9.576e-1667.27Glutamine synthetase OS=Emericella nidulans GN=gln... [more]
GLNA_DEBHA1.251e-1569.09Glutamine synthetase OS=Debaryomyces hansenii GN=G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AA10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406143 ID=EH406143; Name=EH406143; organism=Citrus clementina; type=EST; length=454bp
GACATGAAACTGCAGATATCAACACTTTCTCTTGGGGTGTCGCTAACAGA
GGTGCCTCCATTCGCGTTGGTCGTGACACTGAGAAAGAAGGAAAGGGATA
CTTTGAAGACAGAAGGCCAGCTTCAAACATGGACCCATATGTTGTGACTT
CAATGATCGCTGAAACCACCATTCTCTGGAAGCCTTAGAAAACAAACTTG
AGCATCGATGACGAAGAAGAAATCGAGGGAAAATGAAAGCTTAAATTGAA
CCCACCACAAAAATAATTCTTATGTTTTTATCTTTGTAATGTGTCTATGC
ATTTAAGTCTGTTGTTTGAACTTGTTCCTTGCCATTCAAAACTGTACTCC
GTTTCTCTTGTTCTTCATTCTTTGGGATGCTCGGTTGTGATTACTATATT
ATAGTTTAAAACTACTTCTCCTCTGTTTAAAAAATAAAGAAGATTTATAG
CGTA
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