EH406143

Overview
NameEH406143
Unique NameEH406143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length454
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.806e-14
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 173
            HET  I++FSWGVANRG SIR  R+T  +G GYFEDRRPASN DPY VT  + + ++
Sbjct:  299 HETGSIDSFSWGVANRGTSIRAPRETAAKGYGYFEDRRPASNADPYRVTKALLQFSL 355          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.806e-14
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 173
            HET+  + FSWGVANRG SIR+ R    E KGY EDRRP+SN DPY VT+MIA++ +
Sbjct:  310 HETSSADKFSWGVANRGCSIRIPRQVAAERKGYLEDRRPSSNCDPYQVTAMIAQSIL 366          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_NEUCR (Glutamine synthetase OS=Neurospora crassa GN=gln-1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 167
            HET  I++F++GVANRGASIR+ R+   +G GYFEDRRPASN DPY +T +I ET
Sbjct:  301 HETGSIDSFTYGVANRGASIRIPRECGAKGYGYFEDRRPASNADPYQITGIIMET 355          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_TUBBO (Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.080e-14
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 167
            HET +I+ FS+GVA+RG+SIR+ R   KEGKGYFEDRRPASN  PY +T ++ ET
Sbjct:  299 HETGNIDAFSYGVADRGSSIRIPRSCAKEGKGYFEDRRPASNACPYQITGIMMET 353          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_ACOCA (Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 3.080e-14
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HET++IN FS GVANRGASIR+ R   +E +GYFEDRRP++N DPY VT  I  T +L
Sbjct:  304 HETSNINDFSAGVANRGASIRIPRTVGQEKRGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_SQUAC (Glutamine synthetase, mitochondrial OS=Squalus acanthias PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.023e-14
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HET++IN FS GVANRGASIR+ R   ++ KGYFEDRRP++N DPY VT  +  T +L
Sbjct:  333 HETSNINEFSAGVANRGASIRIPRSVGQDKKGYFEDRRPSANCDPYAVTEALVRTCLL 390          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_COLGL (Glutamine synthetase OS=Colletotrichum gloeosporioides GN=GLN1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.862e-14
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 167
            HET  I+ FS+GVANRGASIR+ R+   +G GYFEDRRPASN DPY +T ++ ET
Sbjct:  299 HETGAIDQFSYGVANRGASIRIPREYTAKGYGYFEDRRPASNADPYRITGILMET 353          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_BOVIN (Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 8.963e-14
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HET++IN FS GVANRGASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  304 HETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTEALIRTCLL 361          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_RAT (Glutamine synthetase OS=Rattus norvegicus GN=Glul PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.171e-13
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HET++IN FS GVANR ASIR+ R   +E KGYFEDRRP++N DPY VT  I  T +L
Sbjct:  304 HETSNINDFSAGVANRSASIRIPRIVGQEKKGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA2_DROME (Glutamine synthetase 2 cytoplasmic OS=Drosophila melanogaster GN=Gs2 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.171e-13
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HET+ IN FS GVANRG SIR+ R    +GKGYFEDRRP+SN DPY V   I  T  L
Sbjct:  310 HETSSINDFSAGVANRGCSIRIPRGVNDDGKGYFEDRRPSSNCDPYSVVEAILRTICL 367          
The following BLAST results are available for this feature:
BLAST of EH406143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GLNA_FUSSH1.806e-1461.40Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_CAEEL1.806e-1461.40Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA_NEUCR2.359e-1463.64Glutamine synthetase OS=Neurospora crassa GN=gln-1... [more]
GLNA_TUBBO3.080e-1463.64Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2... [more]
GLNA_ACOCA3.080e-1462.07Glutamine synthetase OS=Acomys cahirinus GN=GLUL P... [more]
GLNA_SQUAC4.023e-1460.34Glutamine synthetase, mitochondrial OS=Squalus aca... [more]
GLNA_COLGL6.862e-1463.64Glutamine synthetase OS=Colletotrichum gloeosporio... [more]
GLNA_BOVIN8.963e-1460.34Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV... [more]
GLNA_RAT1.171e-1362.07Glutamine synthetase OS=Rattus norvegicus GN=Glul ... [more]
GLNA2_DROME1.171e-1362.07Glutamine synthetase 2 cytoplasmic OS=Drosophila m... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AA10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406143 ID=EH406143; Name=EH406143; organism=Citrus clementina; type=EST; length=454bp
GACATGAAACTGCAGATATCAACACTTTCTCTTGGGGTGTCGCTAACAGA
GGTGCCTCCATTCGCGTTGGTCGTGACACTGAGAAAGAAGGAAAGGGATA
CTTTGAAGACAGAAGGCCAGCTTCAAACATGGACCCATATGTTGTGACTT
CAATGATCGCTGAAACCACCATTCTCTGGAAGCCTTAGAAAACAAACTTG
AGCATCGATGACGAAGAAGAAATCGAGGGAAAATGAAAGCTTAAATTGAA
CCCACCACAAAAATAATTCTTATGTTTTTATCTTTGTAATGTGTCTATGC
ATTTAAGTCTGTTGTTTGAACTTGTTCCTTGCCATTCAAAACTGTACTCC
GTTTCTCTTGTTCTTCATTCTTTGGGATGCTCGGTTGTGATTACTATATT
ATAGTTTAAAACTACTTCTCCTCTGTTTAAAAAATAAAGAAGATTTATAG
CGTA
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