EH406143

Overview
NameEH406143
Unique NameEH406143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length454
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig751 contig Ccv1_Contig751:97..550. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_PIG (Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.529e-13
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HET++IN FS GVANRGASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  304 HETSNINDFSAGVANRGASIRIPRTGGQEKKGYFEDRRPSANCDPFAVTEALIRTCLL 361          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_CANFA (Glutamine synthetase OS=Canis familiaris GN=GLUL PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.529e-13
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HET++IN FS GVANRGASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  304 HETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLL 361          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_SCHPO (Glutamine synthetase OS=Schizosaccharomyces pombe GN=gln1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.997e-13
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 167
            HET  I+ F++GVA+RGAS+R+ R     G GYFEDRRPAS++DPY+VT +I ET
Sbjct:  301 HETGSIDKFTYGVADRGASVRIPRSVAMNGCGYFEDRRPASSIDPYLVTGIITET 355          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.997e-13
Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 167
            HETA  N +S+GV++RGAS+R+    EK+GKGY EDRRP +N+DPYVVT ++ +T
Sbjct:  278 HETAPWNEYSYGVSDRGASVRIPWQVEKDGKGYIEDRRPNANVDPYVVTRLLVDT 332          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.448e-13
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 167
            HETA I+ FS G+ +R  S+R+  DT K G GYFEDRRPA+N+DPY VTS+I +T
Sbjct:  294 HETASIDEFSHGIGSRQCSVRIPNDTVKNGYGYFEDRRPAANIDPYQVTSIILQT 348          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_MACFA (Glutamine synthetase OS=Macaca fascicularis GN=GLUL PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 7.587e-13
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HET++IN FS GVANR ASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  305 HETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLL 362          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_HUMAN (Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 7.587e-13
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HET++IN FS GVANR ASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  304 HETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLL 361          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_CHICK (Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.587e-13
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HET+ I+ FS GVANRGASIR+ R+   E KGYFEDR P++N DPY VT  +  T +L
Sbjct:  304 HETSSIHEFSAGVANRGASIRIPRNVGHEKKGYFEDRGPSANCDPYAVTEALVRTCLL 361          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.294e-12
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = 3
Query:    6 ETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            ET+ I+ FSWGVANR  S+RV R     GKGY EDRRP+SN DPY V + I  T +L
Sbjct:  341 ETSSIDKFSWGVANRAVSVRVPRGVATAGKGYLEDRRPSSNCDPYAVCNAIVRTCLL 397          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 167
            HETA  N +SWG ++RGAS+R+    EK  KG+ EDRRP +NMDPY+VT+++ +T
Sbjct:  271 HETAPWNKYSWGASDRGASVRIPWAVEKAKKGWLEDRRPNANMDPYLVTALMIDT 325          
The following BLAST results are available for this feature:
BLAST of EH406143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GLNA_PIG1.529e-1360.34Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV... [more]
GLNA_CANFA1.529e-1360.34Glutamine synthetase OS=Canis familiaris GN=GLUL P... [more]
GLNA_SCHPO1.997e-1360.00Glutamine synthetase OS=Schizosaccharomyces pombe ... [more]
GLNA2_STRVR1.997e-1358.18Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA_MIMIV4.448e-1360.00Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA_MACFA7.587e-1358.62Glutamine synthetase OS=Macaca fascicularis GN=GLU... [more]
GLNA_HUMAN7.587e-1358.62Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 ... [more]
GLNA_CHICK7.587e-1358.62Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2... [more]
GLNA1_DROME1.294e-1257.89Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA2_FRAAL4.918e-1254.55Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AA10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406143 ID=EH406143; Name=EH406143; organism=Citrus clementina; type=EST; length=454bp
GACATGAAACTGCAGATATCAACACTTTCTCTTGGGGTGTCGCTAACAGA
GGTGCCTCCATTCGCGTTGGTCGTGACACTGAGAAAGAAGGAAAGGGATA
CTTTGAAGACAGAAGGCCAGCTTCAAACATGGACCCATATGTTGTGACTT
CAATGATCGCTGAAACCACCATTCTCTGGAAGCCTTAGAAAACAAACTTG
AGCATCGATGACGAAGAAGAAATCGAGGGAAAATGAAAGCTTAAATTGAA
CCCACCACAAAAATAATTCTTATGTTTTTATCTTTGTAATGTGTCTATGC
ATTTAAGTCTGTTGTTTGAACTTGTTCCTTGCCATTCAAAACTGTACTCC
GTTTCTCTTGTTCTTCATTCTTTGGGATGCTCGGTTGTGATTACTATATT
ATAGTTTAAAACTACTTCTCCTCTGTTTAAAAAATAAAGAAGATTTATAG
CGTA
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