EH406181

Overview
NameEH406181
Unique NameEH406181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13823 contig Ccv1_Contig13823:1436..1796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EH406181 vs. ExPASy Swiss-Prot
Match: S61A2_BOVIN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Bos taurus GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.759e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:    3 ALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 134
            AL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+A E+G  G
Sbjct:  430 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQA-EVGGMG 472
[Close]
BLAST of EH406181 vs. ExPASy Swiss-Prot
Match: SC61A_HALRO (Protein transport protein Sec61 subunit alpha OS=Halocynthia roretzi PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.522e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:    3 ALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 134
            AL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+A E+G  G
Sbjct:  429 ALSVLADFIGAIGSGTGILLAVTIIYQYFEIFVKEQA-EVGGMG 471
The following BLAST results are available for this feature:
BLAST of EH406181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
S61A2_BOVIN5.759e-1179.55Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_HALRO7.522e-1179.55Protein transport protein Sec61 subunit alpha OS=H... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1BF10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406181 ID=EH406181; Name=EH406181; organism=Citrus clementina; type=EST; length=361bp
GTGCATTAACAGTCCTGGCTGATTTCATGGGAGCAATTGGGTCAGGAACT
GGGATATTGCTCGCAGTTACGATCATATATCAGTACTTTGAGACGTTTGA
GAAGGAGAGAGCTAGTGAACTTGGCTTCTTTGGCTTTTAATACACCAATG
ATCTTGAGTTTCAGATTAGTTGGTGAGTAGTATTGTGCAATATTGTTGCA
GAATTCAAAGACTTAACATAGGCCATACCTTGTTAACACCTATGAATAGA
GATTCAGATCAGTCTGTAGTTTGGCCAATGCTTAGCCGCCTTTCTTTTTT
CTTTTGAAAGTTTCTGTACGTTCAACACGCCAAGGAAGATAGAAAGAATT
TCTGTTGAAAA
back to top