EH406215

Overview
NameEH406215
Unique NameEH406215
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length562
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13369 contig Ccv1_Contig13369:632..1193. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FLPA_METM5 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=flpA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.223e-20
Identity = 49/106 (46.23%), Postives = 68/106 (64.15%), Query Frame = 2
Query:    8 KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVG 325
            +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D T     +F  + K L +  F+  ++V +EPFE+DH  +VG
Sbjct:  120 ERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNAKWFLKENGYAMISIKARSVDVTKNPREIFAEQKKILIEGGFEIVDEVNIEPFEKDHMMMVG 225          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FLPA_META3 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=flpA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.903e-20
Identity = 50/108 (46.30%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    2 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVG 325
            +K R N+IPI+ DA +P +Y  +V  VDVIF DVAQP QA IL  NA +FLK GG+ +ISIKA  +D     + +F+ + + L +  F+  ++V +EPFE+DH   VG
Sbjct:  119 SKDRKNLIPILGDATNPVEYSNVVEEVDVIFEDVAQPKQAEILVNNAKWFLKEGGYGMISIKARSVDVLRNPKEIFEEQKQILIEGGFEIVDEVNIEPFEKDHILFVG 226          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FLPA_METM7 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=flpA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.792e-20
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 2
Query:    8 KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVG 325
            +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D T     +F  + K L +  F+  +++ +EPFE+DH  +VG
Sbjct:  120 ERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNARWFLKENGYAMISIKARSVDVTKNPREIFAEQKKILIEGGFEIVDEINIEPFEKDHMMMVG 225          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FLPA_AERPE (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Aeropyrum pernix GN=flpA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.447e-20
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 2
Query:    5 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACV 319
            + R N+ PI+ DAR P KYR LV  VD +++DVAQP+QA I+  NA +FL+ GG+ +++IKA  ID T     V++ E+K L     +  + V L+PF+RDHA +
Sbjct:  123 RDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDPFDRDHAMI 227          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FLPA_SULAC (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus acidocaldarius GN=flpA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.192e-19
Identity = 44/111 (39.64%), Postives = 70/111 (63.06%), Query Frame = 2
Query:    2 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 334
            A+ R N+ PI+ DAR P  Y+ LV  VD+++ D+AQP++  I   NA +FLK  G+ +I+IK+  ID T     ++ +E KKL+   F   E + L+P+++DHA +V  Y+
Sbjct:  121 AQYRPNMFPILADARFPQYYKSLVENVDIVYVDIAQPNETEIAMYNARFFLKKNGYMMIAIKSRSIDVTKDPREIYNAEAKKLEDAGFDIREVLELDPYDKDHAMIVVKYK 231          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FLPA_METMA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanosarcina mazei GN=flpA PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.717e-18
Identity = 51/110 (46.36%), Postives = 67/110 (60.91%), Query Frame = 2
Query:    2 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVT---LEPFERDHACVV 322
            A +R N+ PI+ DA  P  Y  +V  VDVIF DVAQP+QA I A NA  FLK  G+ ++SIKA  ID+    + +F+ EVKKL+Q     FE +T   L P+  DH  V+
Sbjct:  113 ASRRKNIFPILADAGKPDSYAHIVEPVDVIFQDVAQPNQAEIAARNAVRFLKKDGYLLLSIKARSIDTAASPKEIFKEEVKKLEQAFEPGFEVLTARELMPYHEDHLGVM 222          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FLPA_METTH (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanobacterium thermoautotrophicum GN=flpA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.635e-18
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 2
Query:    5 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 322
            + R N+ P++EDA  P  Y  +V   D+++ DVAQPDQ R+   N   FLK  G+ +I IKA  ID T     +F+ EV KL+   F+  +QV L P+E+DH  V+
Sbjct:  114 ESRKNMAPLLEDASRPLSYLRMVEAADLVYCDVAQPDQTRLFIENMDCFLKRDGYGLIMIKARSIDVTRSPRKIFREEVGKLESSGFRIIDQVGLNPYEKDHMAVL 219          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FLPA_METAC (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanosarcina acetivorans GN=flpA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.033e-17
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 2
Query:    2 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVT---LEPFERDHACVV 322
            A +R N+ PI+ DA  P  Y  +V  VD+IF DVAQP+QA I A NA+ FL   G+ ++SIKA  ID+    + +F+ EVKKL+Q     FE +T   L P+  DH  V+
Sbjct:  113 ASRRKNIFPILADAGKPDSYAHIVEPVDLIFQDVAQPNQAEIAARNAARFLNKNGYLLLSIKARSIDTAASPKEIFKEEVKKLEQAFEPGFEILTARDLMPYHEDHLGVL 222          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FLPA_ARCFU (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Archaeoglobus fulgidus GN=flpA PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.349e-17
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 2
Query:    5 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 310
            ++R N+IP++ DA  P KY  +V  VD+I+ D+AQ +Q  IL  NA +FLK  G  VI +KA  IDST   E VF+S +K+++ D FK  +  +L P+ RDH
Sbjct:  102 RERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSLMPYHRDH 202          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FLPA_METBF (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=flpA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.761e-17
Identity = 50/110 (45.45%), Postives = 67/110 (60.91%), Query Frame = 2
Query:    2 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQ---DQFKPFEQVTLEPFERDHACVV 322
            A +R N+ PI+ DA  P  Y  LV  VD+IF DVAQP+QA I A NA  FLK  G+ ++SIKA  ID+    + VF++EVKKL+Q    +F+      L P+  DH  V+
Sbjct:  113 ASRRKNIHPILADAGKPDSYSHLVEPVDLIFQDVAQPNQAEIAARNAVRFLKREGYLLLSIKARSIDTVAKPKEVFKAEVKKLEQAFEPRFEILNAKDLMPYHEDHLGVL 222          
The following BLAST results are available for this feature:
BLAST of EH406215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
FLPA_METM52.223e-2046.23Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_META32.903e-2046.30Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METM73.792e-2045.28Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_AERPE8.447e-2044.76Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULAC4.192e-1939.64Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METMA2.717e-1846.36Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METTH4.635e-1841.51Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METAC1.033e-1744.55Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_ARCFU1.349e-1745.10Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METBF1.761e-1745.45Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406215 ID=EH406215; Name=EH406215; organism=Citrus clementina; type=EST; length=562bp
GGCAAAGAAGAGAACTAATGTTATACCCATAATTGAAGATGCTAGACATC
CTGCCAAGTACCGTATGTTGGTCGGTATGGTAGATGTAATATTTTCTGAC
GTTGCCCAACCGGATCAGGCGAGGATTTTAGCCCTGAATGCATCATATTT
TCTCAAAGCTGGAGGTCATTTTGTTATTTCTATCAAGGCAAACTGCATAG
ATTCCACTGTTCCTGCTGAGGCAGTGTTCCAGAGTGAAGTTAAGAAGCTG
CAACAGGATCAGTTCAAACCCTTTGAGCAAGTGACACTCGAGCCCTTTGA
GCGAGATCACGCCTGTGTTGTTGGTGGCTACCGTATGCCAAAGAAACAGA
AGGCTTAGACCATCATCGGACATCCACCATTTTGTTGTATCCAAACATTA
ATGCTGGAGTCGTTGATTTTGTAGTAGCTAGCTGGGATGAACAATTTTGT
GCTATCTGACCTTGTTATGTTTTATTGAGATTCTTTGCGTGGAACCTCAT
TGTGAAAATGCTTGTTAAAACCCTTTGATCATGTAGCGAAATCTCAATCG
TTCGTCCTGTTT
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