EH406218

Overview
NameEH406218
Unique NameEH406218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406218 vs. ExPASy Swiss-Prot
Match: ATPG_RHOP5 (ATP synthase gamma chain OS=Rhodopseudomonas palustris (strain BisA53) GN=atpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.071e-23
Identity = 77/191 (40.31%), Postives = 104/191 (54.45%), Query Frame = 2
Query:   26 LNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 589
            +N G  KE K   +G K    L R+  + I   I       L +     +A  ++      EFD   + YS+F SV+S +PT   ++ P +VE  A   G      SYE E  E   EIL +L     +  +F A+LEN  S  GA+MSAMD+++RNAG+M+ + TL YNRTRQA IT ELIEIISGA A+
Sbjct:  110 MNQG--KEVKIFCVGRKGYEQLRRNFDRQIVENIELRSVRQLGFVNAEDIAAKVIARFDAGEFDVCTLFYSRFKSVISQIPTAQQII-PLVVEAPAAGAGPA---PSYEYEPEED--EILASLLPRNLAVQIFRALLENNASFYGAQMSAMDNATRNAGDMIRKQTLIYNRTRQAMITKELIEIISGAEAI 292          
BLAST of EH406218 vs. ExPASy Swiss-Prot
Match: ATPG_RHOP2 (ATP synthase gamma chain OS=Rhodopseudomonas palustris (strain HaA2) GN=atpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.071e-23
Identity = 82/195 (42.05%), Postives = 107/195 (54.87%), Query Frame = 2
Query:   26 LNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-------EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 589
            +N G  KE K+  +G K    L R   K I   +       L +    V A+DI K V       EFD   + YS+F SV+S +PT A  L P +VE  A + G +     YE E    + EIL  L     +  +F A+LEN  S  GA+MSAMD+++RNAG+M+ + TL YNRTRQA IT ELIEIISGA A+
Sbjct:  110 MNQG--KEVKFFCVGRKGYEQLRRTFDKQIIENLELRSVRQLGF----VNAEDIAKKVIARFNAGEFDVCTLFYSRFKSVISQIPT-AQQLIPLVVE--APAAGSVATSYEYEPE----EDEILSTLLPRNLAVQIFRALLENNASFYGAQMSAMDNATRNAGDMIRKQTLIYNRTRQAMITKELIEIISGAEAI 291          
BLAST of EH406218 vs. ExPASy Swiss-Prot
Match: ATPG_ERYLH (ATP synthase gamma chain OS=Erythrobacter litoralis (strain HTCC2594) GN=atpG PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.316e-23
Identity = 73/200 (36.50%), Postives = 113/200 (56.50%), Query Frame = 2
Query:    2 KISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI-ELIITELQKNPLNYTQVSVLAD---DILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 589
            K +K+  K      K+ ++ ++G+K +A + RD +K I +   T   K P  + +   +A+   D+ +  EFD   ++Y  F S +   PT   ++     E E   G  +      E E GE   EIL+ L        +F A+LE   SEQGA M+AMD+++RNAG+++++LT+ YNR+RQA+ITTELIEII+GA AL
Sbjct:   99 KEAKAQAKKLIAAGKDVQFYLVGKKGRAPIKRDYEKQIAKHFDTSTVKQP-GFEEADAIANELIDMFEAGEFDVAHLVYPTFKSALVQDPTTNQLIPVPSPEGEGTGGDAV-----VEYEPGEE--EILEELLPRYVKTQLFGALLEREASEQGASMTAMDNATRNAGDLINKLTIQYNRSRQAAITTELIEIIAGAEAL 290          
BLAST of EH406218 vs. ExPASy Swiss-Prot
Match: ATPG_BRASB (ATP synthase gamma chain OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=atpG PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.316e-23
Identity = 79/200 (39.50%), Postives = 110/200 (55.00%), Query Frame = 2
Query:   11 KSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-------EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 589
            ++L  +N G  K+ K+  +G K    L R  +K I   +       + +    V A+DI K V       EFD   + YS+F SV++ +PT   ++ P +VE  A +   +  L  YE E    + EIL  L        +F A+LEN  S  GA+MSAMD+++RNAGEM+ + TL YNRTRQA IT ELIEIISGA A+
Sbjct:  105 RALALMNQG--KDVKFFCVGRKGYEQLRRQFEKQIIAHVDLRSVRQIGF----VHAEDIAKQVIARFDAGEFDVCTLFYSRFKSVIAQIPTAQQII-PLVVEAPAANAAPVA-LYEYEPE----EDEILSALLPRNVGVQIFRALLENNASFYGAQMSAMDNATRNAGEMIRKQTLVYNRTRQAQITKELIEIISGAEAV 292          
BLAST of EH406218 vs. ExPASy Swiss-Prot
Match: ATPG_RHOCA (ATP synthase gamma chain OS=Rhodobacter capsulatus GN=atpG PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 6.944e-23
Identity = 77/197 (39.09%), Postives = 111/197 (56.35%), Query Frame = 2
Query:    8 SKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 589
            +K++  L  G  K  K + +G+K +  L RD  +     I       L+Y     ++ +I+   E   +D   I +S F SV+S +PT   V+ P   E +A S   +     Y+ E G+   EIL  L     +  +F A+LEN  S  GA+MSAMD+++RNAG+M+DRLT+ YNR+RQA+IT ELIEIISGA AL
Sbjct:  104 AKAMELLAQG--KTVKILTVGKKGRDALRRDLGQYYIDHIDLSDVKKLSYPVAQKISQNIIDRFEAGEYDVATIFFSVFQSVISQVPTAKQVI-PAQFETDAASASAV-----YDYEPGDQ--EILTALLPRAVATAIFAALLENNASFNGAQMSAMDNATRNAGDMIDRLTIEYNRSRQAAITKELIEIISGAEAL 290          
BLAST of EH406218 vs. ExPASy Swiss-Prot
Match: ATPG_BRASO (ATP synthase gamma chain OS=Bradyrhizobium sp. (strain ORS278) GN=atpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.944e-23
Identity = 79/200 (39.50%), Postives = 110/200 (55.00%), Query Frame = 2
Query:   11 KSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-------EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 589
            ++L  +N G  K+ K+  +G K    L R  +K I   +       + +    V A+DI K V       EFD   + YS+F SV++ +PT   ++ P +VE  A +   +  L  YE E    + EIL  L        +F A+LEN  S  GA+MSAMD+++RNAGEM+ + TL YNRTRQA IT ELIEIISGA A+
Sbjct:  105 RALALMNQG--KDVKFFCVGRKGYEQLRRQFEKQIIAHVDLRSVRQIGF----VHAEDIAKQVIARFDAGEFDVCTLFYSRFKSVIAQIPTAQQII-PLVVEAPAANAAPVA-LYEYEPE----EDEILSALLPRNVGVQIFRALLENNASFYGAQMSAMDNATRNAGEMIRKQTLVYNRTRQAMITKELIEIISGAEAV 292          
BLAST of EH406218 vs. ExPASy Swiss-Prot
Match: ATPG_AGRVS (ATP synthase gamma chain OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=atpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.944e-23
Identity = 62/130 (47.69%), Postives = 82/130 (63.08%), Query Frame = 2
Query:  200 EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 589
            EFD   + YS+F SV+S +PT A  L P  V     +      +  YE +       IL +L     +  +F A+LENA  E GA+MSAMD+++RNAGEM+++LTL+YNR RQA ITTELIEII+GA AL
Sbjct:  169 EFDVCTLFYSEFKSVISQIPT-ARQLIPAAVGDAPAASSSAAAIYDYEPDAAS----ILSDLIPRNIAVQIFRALLENAAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAKITTELIEIIAGAEAL 293          
BLAST of EH406218 vs. ExPASy Swiss-Prot
Match: ATPG_AGRRK (ATP synthase gamma chain OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=atpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.944e-23
Identity = 71/185 (38.38%), Postives = 106/185 (57.30%), Query Frame = 2
Query:   44 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVL---SPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 589
            K+   ++  E A  I+ R   +D++ +  E      N   +     ++ +  EFD   + YS+F SV+S +PT   ++   +P +VE +A   G + E   YE +       IL +L     S  +F A+LEN   E G++MSAMD+++RNAGEM+++LTL+YNR RQA IT ELIEIISGA AL
Sbjct:  123 KKGYDILRREYASLIIERKELRDVKRVGFE------NADALGKRIIEMFEAGEFDVCTLFYSEFKSVISQVPTGLQLIPASAPAVVEEDAAHKGAVYE---YEPDAAS----ILADLIPRNISVQIFRALLENVAGEMGSKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 294          
BLAST of EH406218 vs. ExPASy Swiss-Prot
Match: ATPG_NITHX (ATP synthase gamma chain OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=atpG PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.069e-23
Identity = 73/196 (37.24%), Postives = 105/196 (53.57%), Query Frame = 2
Query:   11 KSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 589
            ++L  +N G  K+ K+  +G K    L R  +K I   +       L +     +A  ++      EFD   + YS+F SV++ +PT   ++  E+    A +G        YE E  E   EIL  L     +  +F A+LEN  S  GA+MSAMD+++RNAG+M+ + TL YNRTRQA IT ELIEIISGA A+
Sbjct:  105 RALALMNQG--KDVKFFCVGRKGYEQLRRTFEKQIVENVELRSVRQLGFVNAEAIAKKVIARFNAGEFDVCTLFYSRFKSVIAQVPTAQQIIPLEVEAPAANAG----PAPFYEYEPEED--EILTRLLPRNLAVQIFRALLENNASFYGAQMSAMDNATRNAGDMIRKQTLVYNRTRQAMITKELIEIISGAEAI 292          
BLAST of EH406218 vs. ExPASy Swiss-Prot
Match: ATPG_AGRT5 (ATP synthase gamma chain OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=atpG PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.184e-22
Identity = 70/173 (40.46%), Postives = 98/173 (56.65%), Query Frame = 2
Query:   71 EKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 589
            E A  I+ R   +D++ +  E      N  Q++     +    EFD   +IYS+F SV+S +PT   ++       EA    +  +   YE E       IL++L     S  +F A+LEN   E GA+MSAMD+++RNAGEM+++LTL+YNR RQA IT ELIEIISGA AL
Sbjct:  131 EFASLIIERIELRDVKKVGFE------NADQIAKKVISLFNAGEFDVCTLIYSEFKSVISQIPTGLQLIPAATPVVEA---AETTQTAVYEYE--PDAASILEDLIPRNISVQVFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 292          
The following BLAST results are available for this feature:
BLAST of EH406218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_RHOP54.071e-2340.31ATP synthase gamma chain OS=Rhodopseudomonas palus... [more]
ATPG_RHOP24.071e-2342.05ATP synthase gamma chain OS=Rhodopseudomonas palus... [more]
ATPG_ERYLH5.316e-2336.50ATP synthase gamma chain OS=Erythrobacter litorali... [more]
ATPG_BRASB5.316e-2339.50ATP synthase gamma chain OS=Bradyrhizobium sp. (st... [more]
ATPG_RHOCA6.944e-2339.09ATP synthase gamma chain OS=Rhodobacter capsulatus... [more]
ATPG_BRASO6.944e-2339.50ATP synthase gamma chain OS=Bradyrhizobium sp. (st... [more]
ATPG_AGRVS6.944e-2347.69ATP synthase gamma chain OS=Agrobacterium vitis (s... [more]
ATPG_AGRRK6.944e-2338.38ATP synthase gamma chain OS=Agrobacterium radiobac... [more]
ATPG_NITHX9.069e-2337.24ATP synthase gamma chain OS=Nitrobacter hamburgens... [more]
ATPG_AGRT51.184e-2240.46ATP synthase gamma chain OS=Agrobacterium tumefaci... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DB03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406218 ID=EH406218; Name=EH406218; organism=Citrus clementina; type=EST; length=793bp
TAAGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAA
ACAAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGTGAC
TCAAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCCTCT
CAATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATGTAG
AATTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTCTCC
TTTCTGCCGACAATGGCAACTGTATTATCGCCTGAGCTTGTGGAGAGAGA
AGCCGAATCTGGGGGAAAGCTTGGTGAGCTAGACTCCTATGAAATTGAAG
GCGGTGAAACAAAGGGTGAAATACTTCAAAATCTGGCTGAGTTCCAATTC
TCTTGTGTCATGTTCAATGCGGTGTTGGAGAATGCCTGCAGTGAGCAAGG
GGCAAGGATGTCTGCCATGGATAGCTCAAGCAGAAATGCAGGAGAAATGC
TTGATCGCCTCACTCTTACTTATAACAGAACTCGTCAAGCATCTATCACC
ACCGAGTTGATTGAGATTATATCTGGAGCATCAGCACTGGAAGGCTGATT
ACAAAAGCGACAGTGCTCACTTTTCTTGACAGTGACGAAATAAATCCTTG
GTGGAGGCTTTGTTCAAACTTCAATGTGGTACTTTCATAAGAGTTTTTGT
TGAGCTACTCCAATAATCTCTCCAGTGTTAAAACTTGGGGAATTAACAAT
TATACTTGCGATATTTTCAATATAGTTTTTGATTCTCAAAAAA
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