EH406239

Overview
NameEH406239
Unique NameEH406239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14328 contig Ccv1_Contig14328:456..1171. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BRASB (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplB PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.280e-34
Identity = 73/127 (57.48%), Postives = 90/127 (70.87%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GTI+HNIEV  G+GG+L R+AGT A+I+      + +VRL SG ++L+  RCR TIG VSNP H    + KAG+ RW+GRRP  RGVAMNP+DHPHGGGEGR+      GR  +TPWGKP K G KT
Sbjct:  138 GTIVHNIEVKIGKGGQLARSAGTYAQIVGRD-QDYVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRKRWMGRRPHNRGVAMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKT 258          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_DICTD (50S ribosomal protein L2 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.284e-34
Identity = 77/127 (60.63%), Postives = 90/127 (70.87%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GT+IHN+E+ PG+GG+LVRAAGT+A+IL +    +  VRLPSG  +L D  CRATIG VSN  H    L KAG+SRWLGRRP VRG AMN VDHPHGGGEG++          LTPWGKP   GYKT
Sbjct:  138 GTLIHNLELYPGRGGQLVRAAGTAAQILGKE-GKWAYVRLPSGEIRLFDLNCRATIGQVSNVDHQNVSLGKAGRSRWLGRRPHVRGSAMNAVDHPHGGGEGKAPIG---HPSPLTPWGKP-TLGYKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BACCN (50S ribosomal protein L2 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rplB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.284e-34
Identity = 74/128 (57.81%), Postives = 94/128 (73.44%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 385
            GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+   CRAT+G V N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGR+      GR S ++PWGKP   G+KT
Sbjct:  138 GTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLATCRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRAPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BRAJA (50S ribosomal protein L2 OS=Bradyrhizobium japonicum GN=rplB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.595e-34
Identity = 72/129 (55.81%), Postives = 92/129 (71.32%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            GTIIHNIEV  G+GG+L R+AGT A+++      + ++RL SG ++L+  RCR TIG VSNP H    + KAG++RWLGR+P  RGV+MNP+DHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  138 GTIIHNIEVKIGKGGQLARSAGTYAQLVGRD-QDYVIIRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRNRWLGRKPHNRGVSMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BACCQ (50S ribosomal protein L2 OS=Bacillus cereus (strain Q1) GN=rplB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.595e-34
Identity = 74/128 (57.81%), Postives = 94/128 (73.44%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 385
            GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRA +G V N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  138 GTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRAAVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BRASO (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain ORS278) GN=rplB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.307e-34
Identity = 72/127 (56.69%), Postives = 90/127 (70.87%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GTI+HNIEV  G+GG+L R+AGT A+++      + +VRL SG ++L+  RCR TIG VSNP H    + KAG+ RW+GRRP  RGVAMNP+DHPHGGGEGR+      GR  +TPWGKP K G KT
Sbjct:  138 GTIVHNIEVKIGKGGQLARSAGTYAQLVGRD-HDYVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRKRWMGRRPHNRGVAMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKT 258          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_PERMH (50S ribosomal protein L2 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rplB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.543e-34
Identity = 74/127 (58.27%), Postives = 90/127 (70.87%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GT IHNIE+ PG+GG+LVRAAG SA+IL      +  VRLPSG  +LI  +C AT+GTV    H   KL KAG++RWLG RP VRG AMNPVDHPHGGGEG++      G+  ++PWG+P K GYKT
Sbjct:  138 GTFIHNIELTPGKGGQLVRAAGMSAQILGRQ-GDYVQVRLPSGEIRLIHKKCMATVGTVGLAEHELIKLGKAGRARWLGIRPTVRGTAMNPVDHPHGGGEGKT-----FGKHPVSPWGQPTK-GYKT 257          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_NEOSM (50S ribosomal protein L2 OS=Neorickettsia sennetsu (strain Miyayama) GN=rplB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.543e-34
Identity = 76/130 (58.46%), Postives = 94/130 (72.31%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTASP 394
            GT +HN+E+ PG GG+LVR+AG+SA+++     ++ LV LPSG ++LI + C ATIG VSN      KL KAG+SRWLGRRP VRGVAMNPVDHP GGGEG  K+SG  GR  ++PWG P K G KT  P
Sbjct:  143 GTTVHNVELKPGAGGQLVRSAGSSARVIARD-GNYTLVTLPSGEKRLILSTCHATIGAVSNADRKNTKLGKAGRSRWLGRRPSVRGVAMNPVDHPMGGGEG--KTSG--GRHPVSPWGFPTK-GKKTRDP 266          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BACWK (50S ribosomal protein L2 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.543e-34
Identity = 74/128 (57.81%), Postives = 94/128 (73.44%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 385
            GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRA+IG V N  H   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  138 GTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRASIGQVGNEQHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BACCR (50S ribosomal protein L2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.543e-34
Identity = 74/128 (57.81%), Postives = 94/128 (73.44%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 385
            GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRA+IG V N  H   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  138 GTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRASIGQVGNEQHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
The following BLAST results are available for this feature:
BLAST of EH406239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BRASB3.280e-3457.4850S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]
RL2_DICTD4.284e-3460.6350S ribosomal protein L2 OS=Dictyoglomus turgidum ... [more]
RL2_BACCN4.284e-3457.8150S ribosomal protein L2 OS=Bacillus cereus subsp.... [more]
RL2_BRAJA5.595e-3455.8150S ribosomal protein L2 OS=Bradyrhizobium japonic... [more]
RL2_BACCQ5.595e-3457.8150S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BRASO7.307e-3456.6950S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]
RL2_PERMH9.543e-3458.2750S ribosomal protein L2 OS=Persephonella marina (... [more]
RL2_NEOSM9.543e-3458.4650S ribosomal protein L2 OS=Neorickettsia sennetsu... [more]
RL2_BACWK9.543e-3457.8150S ribosomal protein L2 OS=Bacillus weihenstephan... [more]
RL2_BACCR9.543e-3457.8150S ribosomal protein L2 OS=Bacillus cereus (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BB03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406239 ID=EH406239; Name=EH406239; organism=Citrus clementina; type=EST; length=716bp
GCGGGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGGTGGCA
AGCTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAACCCACT
TCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTGATTGA
CACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCCAGCCATGGAG
CTAAGAAGCTTAGGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAAGACCT
GTGGTTAGAGGAGTAGCCATGAATCCAGTTGATCATCCTCATGGTGGAGG
TGAGGGACGAAGCAAAAGTAGTGGTAACCATGGACGGTGTTCACTTACAC
CTTGGGGCAAGCCTTGCAAGTCTGGGTATAAAACTGCATCTCCTAAGAAG
AAAAAGAAATTAGCCTTCTGATAATATTGTCCTTTTGTGCTAGTGAGCAT
TTTTAGTATTGTTACATTATTTTGTTTTCTTTGCAGTTAGTTTTTATCCA
GTTTTAACCGATCAATAATGAAACTGAAGTTTAACTTCCGATTGAACTTA
TTGTCATCTAGTTTTACTCTTCTGTCATTTCAATTTAGCATGATTCAAGA
TGCTGCATTCTGTGCCTGGAACTTGTAACCGGGAAAGAGAGGTAATATGG
GTTAGAATATAGATTTTGTGTTTTGCTTTGTCAGGTTTAGAGATACTCTG
TTCTTTTTCATTTGTA
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