EH406239

Overview
NameEH406239
Unique NameEH406239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14328 contig Ccv1_Contig14328:456..1171. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BART1 (50S ribosomal protein L2 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.055e-32
Identity = 69/129 (53.49%), Postives = 91/129 (70.54%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            GTIIHN+E+ PG+GG++ R+AG  A+++        ++RL SG ++L+ + C AT+G VSNP HG     KAG+SRW G+RP VRGVAMNPVDHPHGGGEGR+      GR  ++PWGKP K G +T S
Sbjct:  138 GTIIHNVEMKPGKGGQIARSAGAYAQLVGRD-HGMAILRLNSGEQRLVSSSCFATVGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVSPWGKPTK-GKRTRS 260          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_GLUDA (50S ribosomal protein L2 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.378e-32
Identity = 70/127 (55.12%), Postives = 90/127 (70.87%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GTI+HNIE+  G GGK+ R+AGT A+++ +  S +  ++L SG  +++   C ATIG VSNP +  + + KAG+SRWLGRRP  RGV MNPVDHPHGGGEGR+      GR  +TPWGKP K GYKT
Sbjct:  138 GTIVHNIELKQGAGGKMARSAGTYAQLVGKD-SGYAQIKLQSGELRVVRGECMATIGAVSNPDNMNQHMGKAGRSRWLGRRPHNRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GYKT 258          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_GEOSL (50S ribosomal protein L2 OS=Geobacter sulfurreducens GN=rplB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.378e-32
Identity = 72/127 (56.69%), Postives = 89/127 (70.08%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GTIIHNIE+  G+GG+L R+AGT A+++ +    +  V+LPSG  +++   C ATIG V N  H    + KAG+SRWLGRRP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT
Sbjct:  138 GTIIHNIELKIGKGGQLARSAGTFAQLMAKE-GKYAQVKLPSGEVRMVLLDCMATIGQVGNIDHENVSIGKAGRSRWLGRRPKVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 258          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_SULSY (50S ribosomal protein L2 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 71/127 (55.91%), Postives = 88/127 (69.29%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GT++HNIE+ PG+GG+LVRAAG SA+IL      +  +RLPSG  +L+  +C ATIG V    H   +L KAG+SRWLG RP VRG AMNP DHPHGGGEGR+      G+  ++PWG P K GYKT
Sbjct:  138 GTLVHNIELTPGKGGQLVRAAGMSAQILGRE-GDYVQIRLPSGELRLVYKKCMATIGAVGLAEHELLELGKAGRSRWLGIRPTVRGTAMNPADHPHGGGEGRT-----FGKHPVSPWGLPTK-GYKT 257          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BRUSU (50S ribosomal protein L2 OS=Brucella suis GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 70/129 (54.26%), Postives = 90/129 (69.77%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  138 GTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BRUSI (50S ribosomal protein L2 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 70/129 (54.26%), Postives = 90/129 (69.77%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  138 GTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BRUO2 (50S ribosomal protein L2 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 70/129 (54.26%), Postives = 90/129 (69.77%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  138 GTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BRUMB (50S ribosomal protein L2 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 70/129 (54.26%), Postives = 90/129 (69.77%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  138 GTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BRUC2 (50S ribosomal protein L2 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 70/129 (54.26%), Postives = 90/129 (69.77%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  138 GTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BRUAB (50S ribosomal protein L2 OS=Brucella abortus GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 70/129 (54.26%), Postives = 90/129 (69.77%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  138 GTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
The following BLAST results are available for this feature:
BLAST of EH406239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BART11.055e-3253.4950S ribosomal protein L2 OS=Bartonella tribocorum ... [more]
RL2_GLUDA1.378e-3255.1250S ribosomal protein L2 OS=Gluconacetobacter diaz... [more]
RL2_GEOSL1.378e-3256.6950S ribosomal protein L2 OS=Geobacter sulfurreduce... [more]
RL2_SULSY1.800e-3255.9150S ribosomal protein L2 OS=Sulfurihydrogenibium s... [more]
RL2_BRUSU1.800e-3254.2650S ribosomal protein L2 OS=Brucella suis GN=rplB ... [more]
RL2_BRUSI1.800e-3254.2650S ribosomal protein L2 OS=Brucella suis (strain ... [more]
RL2_BRUO21.800e-3254.2650S ribosomal protein L2 OS=Brucella ovis (strain ... [more]
RL2_BRUMB1.800e-3254.2650S ribosomal protein L2 OS=Brucella melitensis bi... [more]
RL2_BRUC21.800e-3254.2650S ribosomal protein L2 OS=Brucella canis (strain... [more]
RL2_BRUAB1.800e-3254.2650S ribosomal protein L2 OS=Brucella abortus GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BB03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406239 ID=EH406239; Name=EH406239; organism=Citrus clementina; type=EST; length=716bp
GCGGGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGGTGGCA
AGCTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAACCCACT
TCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTGATTGA
CACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCCAGCCATGGAG
CTAAGAAGCTTAGGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAAGACCT
GTGGTTAGAGGAGTAGCCATGAATCCAGTTGATCATCCTCATGGTGGAGG
TGAGGGACGAAGCAAAAGTAGTGGTAACCATGGACGGTGTTCACTTACAC
CTTGGGGCAAGCCTTGCAAGTCTGGGTATAAAACTGCATCTCCTAAGAAG
AAAAAGAAATTAGCCTTCTGATAATATTGTCCTTTTGTGCTAGTGAGCAT
TTTTAGTATTGTTACATTATTTTGTTTTCTTTGCAGTTAGTTTTTATCCA
GTTTTAACCGATCAATAATGAAACTGAAGTTTAACTTCCGATTGAACTTA
TTGTCATCTAGTTTTACTCTTCTGTCATTTCAATTTAGCATGATTCAAGA
TGCTGCATTCTGTGCCTGGAACTTGTAACCGGGAAAGAGAGGTAATATGG
GTTAGAATATAGATTTTGTGTTTTGCTTTGTCAGGTTTAGAGATACTCTG
TTCTTTTTCATTTGTA
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