EH406239

Overview
NameEH406239
Unique NameEH406239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BRUA2 (50S ribosomal protein L2 OS=Brucella abortus (strain 2308) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 70/129 (54.26%), Postives = 90/129 (69.77%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  138 GTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BRUA1 (50S ribosomal protein L2 OS=Brucella abortus (strain S19) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 70/129 (54.26%), Postives = 90/129 (69.77%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  138 GTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BEII9 (50S ribosomal protein L2 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 71/127 (55.91%), Postives = 89/127 (70.08%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GTI+HNIE+  G+G  +VR+AGT A+++      + +VRL SG ++LI  +C AT+G VSNP H    + KAG+SRWLGRRP  RGV MNPVDHPHGGGEGR+      GR  +TPWGKP K G KT
Sbjct:  138 GTIVHNIEMKIGKGAAMVRSAGTYAQVVGRD-QGYVIVRLNSGEQRLIHGQCFATVGAVSNPDHMNASIGKAGRSRWLGRRPHNRGVTMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKT 258          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_MESSB (50S ribosomal protein L2 OS=Mesorhizobium sp. (strain BNC1) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.350e-32
Identity = 67/129 (51.94%), Postives = 89/129 (68.99%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            GTI+HN+E+ PG+GG++ R+AG+ A+++        ++RL SG ++L+   C AT+G VSNP H    L KAG+ RWLG+RP  RGV MNPVDHPHGGGEGR+      GR  ++PWGKP K G KT S
Sbjct:  139 GTIVHNVELKPGKGGQIARSAGSYAQLVGRD-QGMAILRLNSGEQRLVSGTCMATVGAVSNPDHANVSLGKAGRKRWLGKRPHNRGVTMNPVDHPHGGGEGRTSG----GRHPVSPWGKPTK-GRKTRS 261          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_GEOSW (50S ribosomal protein L2 OS=Geobacillus sp. (strain WCH70) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.350e-32
Identity = 72/128 (56.25%), Postives = 91/128 (71.09%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 385
            GT +HNIE+ PG+GG+LVRAAGTSA++L +    + +VRL SG  ++I   CRAT+G V N  H   K+ KAG++RWLG RP VRG  MNPVDHPHGGGEG++      GR S +TPWGKP   G+KT
Sbjct:  138 GTFVHNIELKPGRGGQLVRAAGTSAQVLGKE-GKYVIVRLASGEVRMILGACRATVGEVGNEQHELVKIGKAGRARWLGIRPTVRGSVMNPVDHPHGGGEGKAPI----GRKSPMTPWGKP-TLGFKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_GEOMG (50S ribosomal protein L2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.350e-32
Identity = 71/127 (55.91%), Postives = 89/127 (70.08%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GTIIHNIE+  G+GG+L R+AGT A+++ +    +  V+LPSG  +++   C AT+G V N  H    + KAG+SRWLGRRP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT
Sbjct:  138 GTIIHNIELKIGKGGQLARSAGTFAQLMAKE-GKYAQVKLPSGEVRMVLLDCMATVGQVGNIDHENVTIGKAGRSRWLGRRPKVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 258          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BARHE (50S ribosomal protein L2 OS=Bartonella henselae GN=rplB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.350e-32
Identity = 69/129 (53.49%), Postives = 90/129 (69.77%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            GTIIHN+E+ PG+GG++ R+AG  A+++        ++RL SG ++L+ + C AT+G VSNP H      KAG+SRW GRRP VRGVAMNPVDHPHGGGEGR+      GR  ++PWGKP K G +T S
Sbjct:  138 GTIIHNVEMKPGKGGQIARSAGAYAQLVGRD-QGMAILRLNSGEQRLVSSGCFATVGAVSNPDHANINDGKAGRSRWRGRRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVSPWGKPTK-GKRTRS 260          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_SINMW (50S ribosomal protein L2 OS=Sinorhizobium medicae (strain WSM419) GN=rplB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.070e-32
Identity = 69/129 (53.49%), Postives = 90/129 (69.77%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            G+IIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A+IG VSNP HG     KAG+SRW G+RP VRGV MNPVDHPHGGGEGR+      GR  +TPWGKP K G +T S
Sbjct:  139 GSIIHNVEMKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVHGSCLASIGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKRTRS 261          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_RHOCS (50S ribosomal protein L2 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.070e-32
Identity = 68/127 (53.54%), Postives = 88/127 (69.29%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GTI+HN+E+ PG+GG+L RAAGT  +++      +  ++LPSG  +++   C ATIG VSNP      + KAG++RWLGRRP VRGV MNP+DHPHGGGEGR+      GR  +TPWGKP K G KT
Sbjct:  139 GTIVHNVELKPGKGGQLARAAGTYLQLVGRD-QGYAQLKLPSGELRVVRGECFATIGAVSNPDQANVVIGKAGRNRWLGRRPSVRGVVMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_RHISN (50S ribosomal protein L2 OS=Rhizobium sp. (strain NGR234) GN=rplB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.070e-32
Identity = 69/129 (53.49%), Postives = 90/129 (69.77%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            G+IIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A+IG VSNP HG     KAG+SRW G+RP VRGV MNPVDHPHGGGEGR+      GR  +TPWGKP K G +T S
Sbjct:  139 GSIIHNVEMKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVHGSCLASIGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKRTRS 261          
The following BLAST results are available for this feature:
BLAST of EH406239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BRUA21.800e-3254.2650S ribosomal protein L2 OS=Brucella abortus (stra... [more]
RL2_BRUA11.800e-3254.2650S ribosomal protein L2 OS=Brucella abortus (stra... [more]
RL2_BEII91.800e-3255.9150S ribosomal protein L2 OS=Beijerinckia indica su... [more]
RL2_MESSB2.350e-3251.9450S ribosomal protein L2 OS=Mesorhizobium sp. (str... [more]
RL2_GEOSW2.350e-3256.2550S ribosomal protein L2 OS=Geobacillus sp. (strai... [more]
RL2_GEOMG2.350e-3255.9150S ribosomal protein L2 OS=Geobacter metallireduc... [more]
RL2_BARHE2.350e-3253.4950S ribosomal protein L2 OS=Bartonella henselae GN... [more]
RL2_SINMW3.070e-3253.4950S ribosomal protein L2 OS=Sinorhizobium medicae ... [more]
RL2_RHOCS3.070e-3253.5450S ribosomal protein L2 OS=Rhodospirillum centenu... [more]
RL2_RHISN3.070e-3253.4950S ribosomal protein L2 OS=Rhizobium sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BB03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406239 ID=EH406239; Name=EH406239; organism=Citrus clementina; type=EST; length=716bp
GCGGGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGGTGGCA
AGCTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAACCCACT
TCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTGATTGA
CACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCCAGCCATGGAG
CTAAGAAGCTTAGGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAAGACCT
GTGGTTAGAGGAGTAGCCATGAATCCAGTTGATCATCCTCATGGTGGAGG
TGAGGGACGAAGCAAAAGTAGTGGTAACCATGGACGGTGTTCACTTACAC
CTTGGGGCAAGCCTTGCAAGTCTGGGTATAAAACTGCATCTCCTAAGAAG
AAAAAGAAATTAGCCTTCTGATAATATTGTCCTTTTGTGCTAGTGAGCAT
TTTTAGTATTGTTACATTATTTTGTTTTCTTTGCAGTTAGTTTTTATCCA
GTTTTAACCGATCAATAATGAAACTGAAGTTTAACTTCCGATTGAACTTA
TTGTCATCTAGTTTTACTCTTCTGTCATTTCAATTTAGCATGATTCAAGA
TGCTGCATTCTGTGCCTGGAACTTGTAACCGGGAAAGAGAGGTAATATGG
GTTAGAATATAGATTTTGTGTTTTGCTTTGTCAGGTTTAGAGATACTCTG
TTCTTTTTCATTTGTA
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