EH406239

Overview
NameEH406239
Unique NameEH406239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_RHOPA (50S ribosomal protein L2 OS=Rhodopseudomonas palustris GN=rplB PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.236e-32
Identity = 70/129 (54.26%), Postives = 89/129 (68.99%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            GTI+HN+E+  G+GG+L R+AGT A+I+      + ++R+ SG ++LI  RC A IG VSNP H    + KAG+ RWLGRRP  RGV MNP+DHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  138 GTIVHNVELKIGKGGQLARSAGTYAQIVGRD-HDYVILRMNSGEQRLIHGRCIAAIGAVSNPDHMNISIGKAGRKRWLGRRPHNRGVVMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_NOVAD (50S ribosomal protein L2 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.236e-32
Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 370
            GTIIHN+E+ PG+GG++ R+AGT  +++        +VRL SG ++ +   C  T+G VSNP +G + L KAG++RWLG+RP+ RGVA NPVDHPHGGGEGR+      GR  +TPWGKP K
Sbjct:  138 GTIIHNVEMKPGKGGQIARSAGTYVQLVGRDRG-MVIVRLNSGEQRYLRGDCMGTVGAVSNPDNGNQNLAKAGRNRWLGKRPLTRGVAKNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK 254          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_LISMO (50S ribosomal protein L2 OS=Listeria monocytogenes GN=rplB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.236e-32
Identity = 71/128 (55.47%), Postives = 91/128 (71.09%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 385
            GT+IHNIE+ PG+GG+LVR+AGTSA++L +    + L+RL SG  ++I   CRATIG V N  H    + KAG+SRW+G+RP VRG  MNP DHPHGGGEG++      GR S ++PWGKP   GYKT
Sbjct:  138 GTVIHNIEMKPGKGGQLVRSAGTSAQVLGKE-GKYVLIRLNSGEVRMILATCRATIGQVGNEQHELINIGKAGRSRWMGKRPTVRGSVMNPNDHPHGGGEGKAPI----GRKSPMSPWGKP-TLGYKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_LISMF (50S ribosomal protein L2 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.236e-32
Identity = 71/128 (55.47%), Postives = 91/128 (71.09%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 385
            GT+IHNIE+ PG+GG+LVR+AGTSA++L +    + L+RL SG  ++I   CRATIG V N  H    + KAG+SRW+G+RP VRG  MNP DHPHGGGEG++      GR S ++PWGKP   GYKT
Sbjct:  138 GTVIHNIEMKPGKGGQLVRSAGTSAQVLGKE-GKYVLIRLNSGEVRMILATCRATIGQVGNEQHELINIGKAGRSRWMGKRPTVRGSVMNPNDHPHGGGEGKAPI----GRKSPMSPWGKP-TLGYKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_LISMC (50S ribosomal protein L2 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.236e-32
Identity = 71/128 (55.47%), Postives = 91/128 (71.09%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 385
            GT+IHNIE+ PG+GG+LVR+AGTSA++L +    + L+RL SG  ++I   CRATIG V N  H    + KAG+SRW+G+RP VRG  MNP DHPHGGGEG++      GR S ++PWGKP   GYKT
Sbjct:  138 GTVIHNIEMKPGKGGQLVRSAGTSAQVLGKE-GKYVLIRLNSGEVRMILATCRATIGQVGNEQHELINIGKAGRSRWMGKRPTVRGSVMNPNDHPHGGGEGKAPI----GRKSPMSPWGKP-TLGYKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_LISIN (50S ribosomal protein L2 OS=Listeria innocua GN=rplB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.236e-32
Identity = 71/128 (55.47%), Postives = 91/128 (71.09%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 385
            GT+IHNIE+ PG+GG+LVR+AGTSA++L +    + L+RL SG  ++I   CRATIG V N  H    + KAG+SRW+G+RP VRG  MNP DHPHGGGEG++      GR S ++PWGKP   GYKT
Sbjct:  138 GTVIHNIEMKPGKGGQLVRSAGTSAQVLGKE-GKYVLIRLNSGEVRMILATCRATIGQVGNEQHELINIGKAGRSRWMGKRPTVRGSVMNPNDHPHGGGEGKAPI----GRKSPMSPWGKP-TLGYKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_GLUOX (50S ribosomal protein L2 OS=Gluconobacter oxydans GN=rplB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.236e-32
Identity = 70/127 (55.12%), Postives = 89/127 (70.08%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GTI+HNIE+  G GGKL R+AGT A+++ +  + +  V+L SG  +L+   C AT+G VSNP +  + + KAG+SRWLGRRP  RGV MNPVDHPHGGGEGR+      GR  +TPWG P K GYKT
Sbjct:  138 GTIVHNIELKQGAGGKLARSAGTYAQLVGKD-AGYAQVKLQSGELRLVRGECMATVGAVSNPDNMNQHMGKAGRSRWLGRRPHNRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GYKT 258          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_CLOCE (50S ribosomal protein L2 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.236e-32
Identity = 68/128 (53.12%), Postives = 91/128 (71.09%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 385
            G++IHNIE+ PG+GG++VRAAG +A+++ +    +  +RLPSG  +++   CRAT+G + N  H   K+ KAG+ RW+G RP VRGV MNPVDHPHGGGEG+S      GR S +TPWGKP   GYKT
Sbjct:  138 GSMIHNIELKPGKGGQMVRAAGNAAQLMAKE-GEYAQIRLPSGEVRMVRINCRATLGQIGNIEHENVKIGKAGRKRWMGVRPTVRGVVMNPVDHPHGGGEGKSPI----GRPSPVTPWGKP-TLGYKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_THESQ (50S ribosomal protein L2 OS=Thermotoga sp. (strain RQ2) GN=rplB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.839e-32
Identity = 68/127 (53.54%), Postives = 89/127 (70.08%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GT++HN+E  PG+GG++ RAAGT  +I+ +   ++ L+R+PSG  + +  +C AT+G V N  H  +   KAG+ RWLGRRP VRGVAMNPVDHPHGGGEGR K  G+H     +PWG P K GYKT
Sbjct:  139 GTLVHNVEFTPGKGGQIARAAGTYCQIMAKE-GNYALLRMPSGELRKVHIKCYATVGVVGNEDHKNEVHGKAGRVRWLGRRPHVRGVAMNPVDHPHGGGEGRGK--GHH---PTSPWGLPTK-GYKT 258          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_THEP1 (50S ribosomal protein L2 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.839e-32
Identity = 68/127 (53.54%), Postives = 89/127 (70.08%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GT++HN+E  PG+GG++ RAAGT  +I+ +   ++ L+R+PSG  + +  +C AT+G V N  H  +   KAG+ RWLGRRP VRGVAMNPVDHPHGGGEGR K  G+H     +PWG P K GYKT
Sbjct:  139 GTLVHNVEFTPGKGGQIARAAGTYCQIMAKE-GNYALLRMPSGELRKVHIKCYATVGVVGNEDHKNEVHGKAGRVRWLGRRPHVRGVAMNPVDHPHGGGEGRGK--GHH---PTSPWGLPTK-GYKT 258          
The following BLAST results are available for this feature:
BLAST of EH406239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_RHOPA5.236e-3254.2650S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_NOVAD5.236e-3252.4650S ribosomal protein L2 OS=Novosphingobium aromat... [more]
RL2_LISMO5.236e-3255.4750S ribosomal protein L2 OS=Listeria monocytogenes... [more]
RL2_LISMF5.236e-3255.4750S ribosomal protein L2 OS=Listeria monocytogenes... [more]
RL2_LISMC5.236e-3255.4750S ribosomal protein L2 OS=Listeria monocytogenes... [more]
RL2_LISIN5.236e-3255.4750S ribosomal protein L2 OS=Listeria innocua GN=rp... [more]
RL2_GLUOX5.236e-3255.1250S ribosomal protein L2 OS=Gluconobacter oxydans ... [more]
RL2_CLOCE5.236e-3253.1350S ribosomal protein L2 OS=Clostridium cellulolyt... [more]
RL2_THESQ6.839e-3253.5450S ribosomal protein L2 OS=Thermotoga sp. (strain... [more]
RL2_THEP16.839e-3253.5450S ribosomal protein L2 OS=Thermotoga petrophila ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BB03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406239 ID=EH406239; Name=EH406239; organism=Citrus clementina; type=EST; length=716bp
GCGGGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGGTGGCA
AGCTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAACCCACT
TCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTGATTGA
CACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCCAGCCATGGAG
CTAAGAAGCTTAGGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAAGACCT
GTGGTTAGAGGAGTAGCCATGAATCCAGTTGATCATCCTCATGGTGGAGG
TGAGGGACGAAGCAAAAGTAGTGGTAACCATGGACGGTGTTCACTTACAC
CTTGGGGCAAGCCTTGCAAGTCTGGGTATAAAACTGCATCTCCTAAGAAG
AAAAAGAAATTAGCCTTCTGATAATATTGTCCTTTTGTGCTAGTGAGCAT
TTTTAGTATTGTTACATTATTTTGTTTTCTTTGCAGTTAGTTTTTATCCA
GTTTTAACCGATCAATAATGAAACTGAAGTTTAACTTCCGATTGAACTTA
TTGTCATCTAGTTTTACTCTTCTGTCATTTCAATTTAGCATGATTCAAGA
TGCTGCATTCTGTGCCTGGAACTTGTAACCGGGAAAGAGAGGTAATATGG
GTTAGAATATAGATTTTGTGTTTTGCTTTGTCAGGTTTAGAGATACTCTG
TTCTTTTTCATTTGTA
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