EH406255

Overview
NameEH406255
Unique NameEH406255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406255 vs. ExPASy Swiss-Prot
Match: NQRF_YERPA (Na(+)-translocating NADH-quinone reductase subunit F OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=nqrF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 46/162 (28.40%), Postives = 75/162 (46.30%), Query Frame = 3
Query:   99 PQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLN--QPPESWNGGVGFVSKEMIQTHC---PAPASDIQVLRCGPPPMNKAMAAHLEALGYTSE 569
            P G MS +   ++ GD + + GP G F  +           GG+G+ PM       L+  + K K+   Y   +  ++  +E+ D   A+  D F  +  L+  QP ++W G  GF+   +++ +    PAP  D +   CGPP MN A+   L+ LG   E
Sbjct:  240 PPGIMSSYIWSLKPGDKVVISGPFGEFFAKDTDAEMV-FIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGARSRREMFYEEDFDQLQAEN-DNFRWHVALSDPQPEDNWTGYTGFIHNVLLENYLKDHPAP-EDCEFYMCGPPMMNAAVIKMLKDLGVEDE 398          
BLAST of EH406255 vs. ExPASy Swiss-Prot
Match: NQRF_YERP3 (Na(+)-translocating NADH-quinone reductase subunit F OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=nqrF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 46/162 (28.40%), Postives = 75/162 (46.30%), Query Frame = 3
Query:   99 PQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLN--QPPESWNGGVGFVSKEMIQTHC---PAPASDIQVLRCGPPPMNKAMAAHLEALGYTSE 569
            P G MS +   ++ GD + + GP G F  +           GG+G+ PM       L+  + K K+   Y   +  ++  +E+ D   A+  D F  +  L+  QP ++W G  GF+   +++ +    PAP  D +   CGPP MN A+   L+ LG   E
Sbjct:  240 PPGIMSSYIWSLKPGDKVVISGPFGEFFAKDTDAEMV-FIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGARSRREMFYEEDFDQLQAEN-DNFRWHVALSDPQPEDNWTGYTGFIHNVLLENYLKDHPAP-EDCEFYMCGPPMMNAAVIKMLKDLGVEDE 398          
BLAST of EH406255 vs. ExPASy Swiss-Prot
Match: NQRF_SHEDO (Na(+)-translocating NADH-quinone reductase subunit F OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=nqrF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 51/197 (25.89%), Postives = 85/197 (43.15%), Query Frame = 3
Query:   21 EEVIKPYTPTTLDSDVGHFELVIKM---------YPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP--ESWNGGVGFVSKEMIQTHC---PAPASDIQVLRCGPPPMNKAMAAHLEALGYTSE 569
            EE I+ Y+      + G   L +++          P G+MS +   ++ GD + + GP G F  +           GG+G+ PM       L+    K K+   Y   +  ++   E+ DG AA+  + F  +  L+ P   + W G  GF+   + + +     AP  D +   CGPP MN A+ + L+ LG   E
Sbjct:  206 EETIRAYSMANYPEEFGIIMLNVRIATPPPRNLSLPCGKMSSYIWSLKAGDKVTISGPFGEFFAKDTDAEMV-FIGGGAGMAPMRSHLFDQLKRLKSKRKMSFWYGARSKREMFYVEDFDGLAAEN-ENFQWHVALSDPQAEDEWTGYTGFIHNVLYENYLRDHDAP-EDCEFYMCGPPMMNAAVISMLKDLGVEDE 399          
BLAST of EH406255 vs. ExPASy Swiss-Prot
Match: NQRF_SERP5 (Na(+)-translocating NADH-quinone reductase subunit F OS=Serratia proteamaculans (strain 568) GN=nqrF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 50/181 (27.62%), Postives = 79/181 (43.65%), Query Frame = 3
Query:   42 TPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLN--QPPESWNGGVGFVSKEMIQTHC---PAPASDIQVLRCGPPPMNKAMAAHLEALGYTSE 569
            TP   D DV          P G MS +   ++ GD + + GP G F  +           GG+G+ PM       L     K K+   Y   +  ++  +E+ +   A+  + FT +  L+  QP ++W G  GF+   +++ +    PAP  D +   CGPP MN A+   L+ LG   E
Sbjct:  231 TPPPRDPDV----------PPGIMSSYIWSLKAGDKVTISGPFGEFFAKDTDAEMI-FIGGGAGMAPMRSHIFDQLNRLKSKRKITFWYGARSLREMFYEEDFNQLQAEN-ENFTWHVALSDPQPEDNWTGYTGFIHNVLLENYLRNHPAP-EDCEFYMCGPPMMNAAVIKMLKDLGVEDE 398          
The following BLAST results are available for this feature:
BLAST of EH406255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
NQRF_YERPA9.603e-1128.40Na(+)-translocating NADH-quinone reductase subunit... [more]
NQRF_YERP39.603e-1128.40Na(+)-translocating NADH-quinone reductase subunit... [more]
NQRF_SHEDO9.603e-1125.89Na(+)-translocating NADH-quinone reductase subunit... [more]
NQRF_SERP59.603e-1127.62Na(+)-translocating NADH-quinone reductase subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BC05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406255 ID=EH406255; Name=EH406255; organism=Citrus clementina; type=EST; length=755bp
GGGGCAAGGATAGTCAGGGTGAAGAGGTTATTAAACCATATACCCCAACC
ACATTGGATTCTGATGTTGGTCATTTTGAATTGGTTATTAAGATGTACCC
CCAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGTGATTATC
TTGCCGTGAAGGGACCCAAGGGTCGATTCAGGTATCAACCTGGCCAGGTC
AGAGCATTTGGGATGACTGCAGGAGGTTCTGGCATCACTCCAATGTTCCA
AGTTACTAGAGCCATATTAGAGAACCCAAATGACAAGACAAAGGTGCACC
TCATTTATGCCAATGTTACATATGAGGACATTCTTTTAAAGGAAGAATTG
GATGGATTTGCGGCGAAGTACCCTGATCAATTCACAATCTACTATGTGTT
GAATCAGCCTCCTGAATCGTGGAATGGTGGTGTTGGCTTTGTCTCAAAGG
AAATGATTCAAACCCATTGTCCCGCACCTGCTTCTGATATTCAGGTTCTG
AGATGTGGTCCACCACCAATGAACAAGGCCATGGCTGCTCACCTCGAGGC
ACTTGGATATACTTCAGAAATGCTGTTCCAGTTCTGATCACTTCCATAAG
GTTGTCCAATTATTTGGACTGATATTCGTCACTCCTATTCGGTCCACATA
AAGAACTTTTTTACATCTCTTTTAAGCTGTATTTTGTTTCTCCTGTGACT
AAAGAAGCCGATGAAACCGGAGCATGGATTTTGTAATTGATCTTTTGCTT
TAACC
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