EH406255

Overview
NameEH406255
Unique NameEH406255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15071 contig Ccv1_Contig15071:287..1041. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406255 vs. ExPASy Swiss-Prot
Match: NIA2_HORVU (Nitrate reductase [NADH] (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.181e-34
Identity = 77/206 (37.38%), Postives = 125/206 (60.68%), Query Frame = 3
Query:   18 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDY-LAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAIL-ENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ---PPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGY 560
            G+  ++ YTPT++  ++G FEL++K+Y +         G M+ +   ++VG   + VKGP G   Y          +  + R   M  G SGITPM+QV +A+L + P D+T++HL+YAN + +DILL++ELD +A +YPD+  ++YV++Q   P + W   VGFV++++++ H P    D   L CGPPPM K A++ +LE + Y
Sbjct:  698 GKLCMRAYTPTSMVDEIGQFELLVKVYFRDEHPKFPNGGLMTQYLESLQVGSSSIDVKGPLGHVEYTGRGNFVINGKQRRARRLAMICGSSGITPMYQVIQAVLRDQPEDETEMHLVYANRSEDDILLRDELDRWATEYPDRLKVWYVIDQVKRPEDGWKFSVGFVTEDILRAHVPEGGDDTLALACGPPPMIKFAISPNLEKMKY 903          
BLAST of EH406255 vs. ExPASy Swiss-Prot
Match: NIA1_PHAVU (Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris GN=NIA1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.798e-33
Identity = 79/198 (39.90%), Postives = 120/198 (60.61%), Query Frame = 3
Query:   30 IKPYTPTTLDSDVGHFELVIKMYPQGR---------MSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLN-QPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGY 560
            ++ YTPT+   +VG F+LV+K+Y +G          MS H   + +G  + VKGP G   Y          +P   +   M AGG+GITP++QV +AIL++P D+T+++++YAN T +DILLKEELD +A K+ D+  ++YVL     E W   VGF+++ +++ H P  + D   L CGPPPM + A+  +LE LGY
Sbjct:  676 MRAYTPTSSVDEVGFFDLVVKVYFKGVHPNFPNGGIMSQHLDSLPIGSVVDVKGPLGHIEYTGRGNFLVHGKPRFAKRLTMLAGGTGITPIYQVVQAILKDPEDRTEMYVVYANRTEDDILLKEELDEWAKKH-DRLKVWYVLQANIREGWEYSVGFITESILREHVPLASPDTLALTCGPPPMIQFAVQPNLEKLGY 872          
BLAST of EH406255 vs. ExPASy Swiss-Prot
Match: NB5R2_DANRE (NADH-cytochrome b5 reductase 2 OS=Danio rerio GN=cyb5r2 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.068e-33
Identity = 81/215 (37.67%), Postives = 120/215 (55.81%), Query Frame = 3
Query:   18 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQP-----GQVRAF---GMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPM-NKAMAAHLEALGYTSEMLFQF 584
            G  V++ YTP + D D G+ +LV+K+Y +         G+MS +   M++GD +  +GP        KG+F  +P      +VR F    M AGG+GITPM Q+ R+I  +  D+T   LI+AN T +DILL+ ELD     +P +  ++Y L++P E W    GFV+  M++ H P   SD+ V+ CGPP M  KA   +L  LGY  E +F +
Sbjct:   95 GSLVVRAYTPVSSDQDQGYVDLVVKVYYKNTHPSYPDGGKMSQYLDNMKIGDTIDFRGPNGLLVYNGKGKFAIRPDKKSEAEVRKFKHVAMIAGGTGITPMLQLIRSITADSFDETVCSLIFANQTEKDILLRNELDEVHRNHPSKLKLWYTLDRPSEGWKYSEGFVNAAMMKDHLPPADSDVLVVMCGPPAMIEKACLPNLLKLGYKKENIFAY 309          
BLAST of EH406255 vs. ExPASy Swiss-Prot
Match: NIA2_BRANA (Nitrate reductase [NADH], clone PBNBR1412 OS=Brassica napus GN=NIA2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.166e-32
Identity = 73/198 (36.87%), Postives = 116/198 (58.59%), Query Frame = 3
Query:   30 IKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCP-APASDIQVLRCGPPPMNK-AMAAHLEALGY 560
            ++ YTPT+    VGH +LV+K+Y +         G MS H   + +G  L +KGP G   Y          +P   +   M AGG GITP++QV ++IL +P D+T++ ++YAN T +DIL++EEL+G+A K+ D+  ++YV+    E WN   GF+++ +++ H P     +   L CGPPPM + A+  +LE +GY
Sbjct:  705 LRAYTPTSTVDAVGHIDLVVKVYFKDVHPRFPNGGLMSQHLDSLPIGSVLNIKGPLGHIEYLGKGNFMVTGKPKFAKKLAMLAGGPGITPIYQVIQSILSDPEDETEMFVVYANRTEDDILVREELEGWANKHKDRLKVWYVVEIAKEGWNYSTGFITEPVLREHVPEGLEGESLALACGPPPMIQFALQPNLEKMGY 902          
BLAST of EH406255 vs. ExPASy Swiss-Prot
Match: NIA2_ARATH (Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana GN=NIA2 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.166e-32
Identity = 76/198 (38.38%), Postives = 118/198 (59.60%), Query Frame = 3
Query:   30 IKPYTPTTLDSDVGHFELVIKMY-----PQ----GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCP-APASDIQVLRCGPPPMNK-AMAAHLEALGY 560
            ++ YTP++    VG+FELV+K+Y     P+    G MS +   + +G  L +KGP G   Y          +P       M AGG+GITP++Q+ +AIL++P D+T++++IYAN T EDILL+EELDG+A +YPD+  ++YV+    E W    GF+S+ +++ H P         + CGPPPM + A+  +LE + Y
Sbjct:  711 LRAYTPSSTVDVVGYFELVVKIYFGGVHPRFPNGGLMSQYLDSLPIGSTLEIKGPLGHVEYLGKGSFTVHGKPKFADKLAMLAGGTGITPVYQIIQAILKDPEDETEMYVIYANRTEEDILLREELDGWAEQYPDRLKVWYVVESAKEGWAYSTGFISEAIMREHIPDGLDGSALAMACGPPPMIQFAVQPNLEKMQY 908          
BLAST of EH406255 vs. ExPASy Swiss-Prot
Match: NIA1_BRANA (Nitrate reductase [NADH], clone PBNBR1405 OS=Brassica napus GN=NIA1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.166e-32
Identity = 75/198 (37.88%), Postives = 117/198 (59.09%), Query Frame = 3
Query:   30 IKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRYQ----------PGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCP-APASDIQVLRCGPPPMNK-AMAAHLEALGY 560
            ++ YTPT+    VG+ +LVIK+Y +         G MS H   + +G  L +KGP G   YQ          P       M AGG+GITP++QV ++IL +P D+T++ ++YAN T +DIL++EEL+G+A+K+PD+  I+YV+    E W    GF+++ +++ H P     +   L CGPPPM + A+  +LE +GY
Sbjct:  705 LRAYTPTSTVDAVGYIDLVIKVYFKNVHPRFPNGGLMSQHPDSLPIGAVLDIKGPLGHIEYQGRGKFMVSGKPKFANKLAMLAGGTGITPIYQVIQSILSDPEDETEMFVVYANRTEDDILVREELEGWASKFPDRLKIWYVVEIAKEGWEYSTGFITEAVLREHVPEGLEGESLALACGPPPMIQFALQPNLEKMGY 902          
BLAST of EH406255 vs. ExPASy Swiss-Prot
Match: NIA1_ARATH (Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana GN=NIA1 PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.597e-32
Identity = 70/198 (35.35%), Postives = 119/198 (60.10%), Query Frame = 3
Query:   30 IKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRYQ----------PGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCP-APASDIQVLRCGPPPMNK-AMAAHLEALGY 560
            ++ YTPT+    VGH +LV+K+Y +         G MS H   + +G  + +KGP G   Y+          P   +   M AGG+GITP++Q+ ++IL +P D+T+++++YAN T +DIL++EEL+G+A+K+ ++  I+YV+    E W+   GF+++ +++ H P     +   L CGPPPM + A+  +LE +GY
Sbjct:  711 LRAYTPTSAIDAVGHIDLVVKVYFKDVHPRFPNGGLMSQHLDSLPIGSMIDIKGPLGHIEYKGKGNFLVSGKPKFAKKLAMLAGGTGITPIYQIIQSILSDPEDETEMYVVYANRTEDDILVREELEGWASKHKERLKIWYVVEIAKEGWSYSTGFITEAVLREHIPEGLEGESLALACGPPPMIQFALQPNLEKMGY 908          
BLAST of EH406255 vs. ExPASy Swiss-Prot
Match: MCR1B_VANPO (NADH-cytochrome b5 reductase 2-B OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=MCR1B PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.597e-32
Identity = 77/201 (38.31%), Postives = 110/201 (54.73%), Query Frame = 3
Query:   30 IKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP----ESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQ 581
            I+PYTP +L    G  E VIK  P G MS H   ++  D ++  GP  ++ ++  +  +  +   GSGITP++Q+  +IL NP DKTK++L YAN T +DILLK+ELD F  K+ D+  I+Y L+QP      S     GF++KE I++  PA   +  V  CGP P  KA A               L+ LGYT   +F+
Sbjct:  105 IRPYTPVSLPETQGVIEFVIKHVPNGGMSSHMFSLKPNDTVSFTGPIVKYEWKQNKFDSVTLLGAGSGITPLYQLMGSILSNPEDKTKINLFYANKTSDDILLKKELDEFQQKFSDRVKIHYYLSQPKTKDIASTGAKKGFIAKEDIESLAPASNENTHVFVCGPEPFVKAYAGQQGPLFFQGSFGGILKELGYTKSQVFK 305          
BLAST of EH406255 vs. ExPASy Swiss-Prot
Match: NIA_CUCMA (Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.430e-32
Identity = 78/204 (38.24%), Postives = 117/204 (57.35%), Query Frame = 3
Query:   18 GEEVIKPYTPTTLDSDVGHFELVIKMYPQGR---------MSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGYTSE 569
            G+  ++ YTPT+   ++G FELV+K+Y +G          MS +   M VG  L VKGP G   Y          +P   R   M AGG+GITP++QV +AIL++P D+T+++++YAN T +DILL++ELD +A K       Y V     E W   VGF+++ +++ H PA A D   L CGPP M + A+  +LE + Y ++
Sbjct:  709 GKLCMRAYTPTSSIDEMGFFELVVKVYFKGVHPKFPNGGIMSQYLDSMEVGSTLDVKGPLGHIEYTGRGNFMVHGKPRFARRLAMLAGGTGITPIYQVVQAILKDPEDETEMYVVYANRTEDDILLRDELDTWAKKNQRLKVWYVVQESIREGWEYSVGFITENILREHIPAAAEDTLALACGPPAMIQFAVQPNLEKMNYDTK 912          
BLAST of EH406255 vs. ExPASy Swiss-Prot
Match: NIA_VOLCA (Nitrate reductase [NADH] OS=Volvox carteri GN=NITA PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.868e-32
Identity = 79/214 (36.92%), Postives = 117/214 (54.67%), Query Frame = 3
Query:   18 GEEVIKPYTPTTLDSDVGHFELVIKMY---------PQGRMSHHFREMRVGDYLAVKGPKGRFRYQP-------GQVRA----FGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPES-WNGGVGFVSKEMIQTH---CPAPASDIQVLRCGPPPM-NKAMAAHLEALGYTSEMLFQF 584
            GE V++ YTP + D ++G  +++IK+Y           G+MS HF  +R+GD +  KGP G F Y         G++          AGG+GITP + V +A L +P DKT++ L++AN T EDILL+EELD  A  +PD+F +++ ++Q   S W    G V+ EM + H   C  P  +   L CGPP M        LE++GY+ E +  F
Sbjct:  653 GENVMRAYTPISGDEELGRLDMLIKVYFANEHPAFPDGGKMSQHFESLRIGDTVEFKGPLGHFVYDGRGSYTLNGKLHKHATHMSFVAGGTGITPCYAVIKAALRDPEDKTQISLVFANNTEEDILLREELDELANNHPDRFHLWHTVSQTNSSDWKFSTGRVTLEMFKQHLFACSGP--ECLALMCGPPAMLEHCCVPFLESMGYSKEQMIHF 864          
The following BLAST results are available for this feature:
BLAST of EH406255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
NIA2_HORVU6.181e-3437.38Nitrate reductase [NADH] (Fragment) OS=Hordeum vul... [more]
NIA1_PHAVU1.798e-3339.90Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris G... [more]
NB5R2_DANRE3.068e-3337.67NADH-cytochrome b5 reductase 2 OS=Danio rerio GN=c... [more]
NIA2_BRANA1.166e-3236.87Nitrate reductase [NADH], clone PBNBR1412 OS=Brass... [more]
NIA2_ARATH1.166e-3238.38Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana... [more]
NIA1_BRANA1.166e-3237.88Nitrate reductase [NADH], clone PBNBR1405 OS=Brass... [more]
NIA1_ARATH2.597e-3235.35Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana... [more]
MCR1B_VANPO2.597e-3238.31NADH-cytochrome b5 reductase 2-B OS=Vanderwaltozym... [more]
NIA_CUCMA4.430e-3238.24Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 ... [more]
NIA_VOLCA9.868e-3236.92Nitrate reductase [NADH] OS=Volvox carteri GN=NITA... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BC05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406255 ID=EH406255; Name=EH406255; organism=Citrus clementina; type=EST; length=755bp
GGGGCAAGGATAGTCAGGGTGAAGAGGTTATTAAACCATATACCCCAACC
ACATTGGATTCTGATGTTGGTCATTTTGAATTGGTTATTAAGATGTACCC
CCAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGTGATTATC
TTGCCGTGAAGGGACCCAAGGGTCGATTCAGGTATCAACCTGGCCAGGTC
AGAGCATTTGGGATGACTGCAGGAGGTTCTGGCATCACTCCAATGTTCCA
AGTTACTAGAGCCATATTAGAGAACCCAAATGACAAGACAAAGGTGCACC
TCATTTATGCCAATGTTACATATGAGGACATTCTTTTAAAGGAAGAATTG
GATGGATTTGCGGCGAAGTACCCTGATCAATTCACAATCTACTATGTGTT
GAATCAGCCTCCTGAATCGTGGAATGGTGGTGTTGGCTTTGTCTCAAAGG
AAATGATTCAAACCCATTGTCCCGCACCTGCTTCTGATATTCAGGTTCTG
AGATGTGGTCCACCACCAATGAACAAGGCCATGGCTGCTCACCTCGAGGC
ACTTGGATATACTTCAGAAATGCTGTTCCAGTTCTGATCACTTCCATAAG
GTTGTCCAATTATTTGGACTGATATTCGTCACTCCTATTCGGTCCACATA
AAGAACTTTTTTACATCTCTTTTAAGCTGTATTTTGTTTCTCCTGTGACT
AAAGAAGCCGATGAAACCGGAGCATGGATTTTGTAATTGATCTTTTGCTT
TAACC
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