EH406290

Overview
NameEH406290
Unique NameEH406290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EH406290_ssr3 microsatellite EH406290_ssr3:3..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9851 contig Ccv1_Contig9851:7..647. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EH406290 vs. ExPASy Swiss-Prot
Match: FAD5_MORAP (Delta(5) fatty acid desaturase OS=Mortierella alpina GN=DES1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.324e-11
Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:   85 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVP 327
            K   ++E+A HN + D +L I G+VY+VT FL  HPGG + LL    +D T  FE      +A  +M+KY++G + S+ +P
Sbjct:    7 KTFTWEELAAHNTKGDLFLAIRGRVYDVTKFLSRHPGGVDTLLLGAGRDVTPVFEMYHAFGAADAIMKKYYVGTLVSNELP 87
The following BLAST results are available for this feature:
BLAST of EH406290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
FAD5_MORAP9.324e-1139.51Delta(5) fatty acid desaturase OS=Mortierella alpi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DE04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406290 ID=EH406290; Name=EH406290; organism=Citrus clementina; type=EST; length=641bp
AGGTCTGTCTGTCTGTCCTTCTGCAAGCTCCTATAATTCTGATTCTGCGT
GAGCAGTAGCTGAAATAGCCAGAAAAGAATGGCCAAAGTTCATGATTTTC
AAGAGGTGGCAAAGCACAATAATAGAGATGATTGTTGGCTTGTAATTTCT
GGAAAGGTCTATAATGTGACTCCGTTTCTCGAAGATCATCCTGGTGGTGA
TGAAGTCTTGCTAGCTGCTACTGAGAAGGATGCAACAGACGACTTTGAAG
ATGTGGGTCACAGCGATTCTGCCAGAGAGATGATGGAAAAATACCACATT
GGTGAGATTGATAGCTCCAGTGTTCCAGCAAAAAGGAAGTACACTCCACC
CCAACAAGCAGTTAATAGTCCCGAAGACACTGGATCTGCAGCAAAGATTC
TACAGTTCCTGGTACCGATGTTGATCCTGGGCATAGCATTTGCTTTCCGT
TACTTTTCCAAGAAAGAAGAGTGAAGCATTGTATGAATTGCAAAACCGAA
CCAGATACCTCTTCGTTAGTTTACTACCTATCCTATAGTATTAGAACTTC
AATTGGCACTTGGTATCAGGATTTGTTTTGATACTAAACTATGTGTAGCA
ATAATAATTGGTGCTTCGTGCATCCTCGTTGAAGGATGTGA
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