EH406293

Overview
NameEH406293
Unique NameEH406293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9647 contig Ccv1_Contig9647:29..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS14_CRIGR (40S ribosomal protein S14 OS=Cricetulus griseus GN=RPS14 PE=2 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 7.765e-53
Identity = 107/140 (76.43%), Postives = 118/140 (84.29%), Query Frame = 3
Query:   81 MSRRKNREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 497
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS14_RAT (40S ribosomal protein S14 OS=Rattus norvegicus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 1.730e-52
Identity = 106/140 (75.71%), Postives = 118/140 (84.29%), Query Frame = 3
Query:   81 MSRRKNREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 497
            M+ RK ++ KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKGKDKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS14_AEDAE (40S ribosomal protein S14 OS=Aedes aegypti GN=RpS14 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.565e-51
Identity = 104/140 (74.29%), Postives = 117/140 (83.57%), Query Frame = 3
Query:   81 MSRRKNREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 497
            M+ RKN+  KEE  V+LGP VR+GE VFGVAHI+ASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKNKTVKEEVQVSLGPQVREGEIVFGVAHIYASFNDTFVHVTDLSGKETISRVTGGMKVKADRDEASPYAAMLAAQDVAEKCKSLGITALHIKLRATGGNRTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 140          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS14B_ANOGA (40S ribosomal protein S14b OS=Anopheles gambiae GN=RpS14b PE=3 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 5.565e-51
Identity = 104/137 (75.91%), Postives = 115/137 (83.94%), Query Frame = 3
Query:   90 RKNREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 497
            RKN+  KEE  V+LGP VRDGE VFGVAHI+ASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:    5 RKNKVAKEEVQVSLGPQVRDGEVVFGVAHIYASFNDTFVHVTDLSGKETISRVTGGMKVKADRDEASPYAAMLAAQDVAEKCKSLGITALHIKLRATGGNRTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 141          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS14A_ANOGA (40S ribosomal protein S14a OS=Anopheles gambiae GN=RpS14a PE=3 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 7.268e-51
Identity = 104/137 (75.91%), Postives = 115/137 (83.94%), Query Frame = 3
Query:   90 RKNREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 497
            RKN+  KEE  V+LGP VRDGE VFGVAHI+ASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:    5 RKNKVVKEEVQVSLGPQVRDGEVVFGVAHIYASFNDTFVHVTDLSGKETISRVTGGMKVKADRDEASPYAAMLAAQDVAEKCKSLGITALHIKLRATGGNRTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 141          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS14_DROME (40S ribosomal protein S14 OS=Drosophila melanogaster GN=RpS14a PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.492e-51
Identity = 105/140 (75.00%), Postives = 115/140 (82.14%), Query Frame = 3
Query:   81 MSRRKNREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 497
            M+ RK +  KEE  V LGP VRDGE VFGVAHI+ASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 140          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS14A_DROYA (40S ribosomal protein S14a OS=Drosophila yakuba GN=RpS14a PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.492e-51
Identity = 105/140 (75.00%), Postives = 115/140 (82.14%), Query Frame = 3
Query:   81 MSRRKNREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 497
            M+ RK +  KEE  V LGP VRDGE VFGVAHI+ASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 140          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS14_NEUCR (40S ribosomal protein S14 OS=Neurospora crassa GN=rps-14 PE=3 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.619e-50
Identity = 101/139 (72.66%), Postives = 113/139 (81.29%), Query Frame = 3
Query:   81 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 497
            M  +K   P +EN++LGP +R+GE VFGVA IFASFNDTF+HVTDLSGRET  R+ GG+KVKADRDESSPYAAMLAAQDV+ RCKELGITALHIK+RA            AQSALRALARSGMKIGRIEDVTP P+DST
Sbjct:    1 MPPKKAARPAQENISLGPQIREGELVFGVARIFASFNDTFVHVTDLSGRETTDRVIGGIKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKIRATGGNGTRTPGPGAQSALRALARSGMKIGRIEDVTPTPSDST 139          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS14_BOMMO (40S ribosomal protein S14 OS=Bombyx mori GN=RpS14 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.711e-50
Identity = 104/140 (74.29%), Postives = 114/140 (81.43%), Query Frame = 3
Query:   81 MSRRKNREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 497
            M+ RKN+  KEE  VTLGP    GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTP+P+DST
Sbjct:    1 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPVPSDST 140          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS14_CAEEL (40S ribosomal protein S14 OS=Caenorhabditis elegans GN=rps-14 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.053e-49
Identity = 99/141 (70.21%), Postives = 115/141 (81.56%), Query Frame = 3
Query:   81 MSRRKNREPKEEN--VTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 497
            M+  +  + KEE   V+LGP  ++GE +FGVAHIFASFNDTF+H+TD+SGRET+VR+TGGMKVKADRDESSPYAAMLAAQDV+ RCK+LGI ALHIKLRA            AQSALRALAR+GMKIGRIEDVTPIP+D T
Sbjct:    1 MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGGMKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCT 141          
The following BLAST results are available for this feature:
BLAST of EH406293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
RS14_CRIGR7.765e-5376.4340S ribosomal protein S14 OS=Cricetulus griseus GN... [more]
RS14_RAT1.730e-5275.7140S ribosomal protein S14 OS=Rattus norvegicus GN=... [more]
RS14_AEDAE5.565e-5174.2940S ribosomal protein S14 OS=Aedes aegypti GN=RpS1... [more]
RS14B_ANOGA5.565e-5175.9140S ribosomal protein S14b OS=Anopheles gambiae GN... [more]
RS14A_ANOGA7.268e-5175.9140S ribosomal protein S14a OS=Anopheles gambiae GN... [more]
RS14_DROME9.492e-5175.0040S ribosomal protein S14 OS=Drosophila melanogast... [more]
RS14A_DROYA9.492e-5175.0040S ribosomal protein S14a OS=Drosophila yakuba GN... [more]
RS14_NEUCR1.619e-5072.6640S ribosomal protein S14 OS=Neurospora crassa GN=... [more]
RS14_BOMMO4.711e-5074.2940S ribosomal protein S14 OS=Bombyx mori GN=RpS14 ... [more]
RS14_CAEEL3.053e-4970.2140S ribosomal protein S14 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DC11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406293 ID=EH406293; Name=EH406293; organism=Citrus clementina; type=EST; length=755bp
GATTGTTTAGGGTTTTCACATTTTCCTTTCGTCTAGGAACAAACCCTAGC
CTTCTCAATCCTTCTCGTGTTTTCGCAGGCATGTCGAGGAGAAAGAATAG
GGAGCCTAAGGAAGAGAATGTGACTCTAGGACCTGCTGTGAGAGATGGGG
AGCATGTCTTTGGAGTTGCCCACATCTTTGCATCGTTCAATGATACATTT
ATTCATGTGACTGATCTGTCAGGCAGAGAAACCCTTGTCCGTATCACTGG
TGGTATGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCTTACGCTGCCA
TGCTTGCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAATCACT
GCTCTTCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAACACC
CGGTCCAGGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGGATGA
AAATTGGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCACACGC
AGAAAGGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTCTTGTTTGTCCG
ATTGTCTTGTTTGTCCGATTGTCTTGTTTTATGCGGGCATTCTGAATGGG
ACAGTTGTTCCTTAAAGTTAGTTGAAGTTACTTTTCAATTTTGGAACTAA
TTTATAGTTTTATCTGTCGCTATTAAAAGATTTTATTTTCCTGCTTTTTG
TAAAAACAATAGGTGGCCTTGAGAGCATATGGCATTACTGGTGTCTTGCA
TTGCG
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