EH406293

Overview
NameEH406293
Unique NameEH406293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_JANMA (30S ribosomal protein S11 OS=Janthinobacterium sp. (strain Marseille) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E GI  L ++++              +SA+RAL   G+KI +I+DVTP+P
Sbjct:   24 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKVAIECGIKNLEVRIKG--------PGPGRESAVRALNNLGIKITQIQDVTPVP 122          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_BRASO (30S ribosomal protein S11 OS=Bradyrhizobium sp. (strain ORS278) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485
            GVAH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS + +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_BRASB (30S ribosomal protein S11 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485
            GVAH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS + +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_BRAJA (30S ribosomal protein S11 OS=Bradyrhizobium japonicum GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485
            GVAH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS + +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_SILST (30S ribosomal protein S11 OS=Silicibacter sp. (strain TM1040) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 45/134 (33.58%), Postives = 68/134 (50.75%), Query Frame = 3
Query:   81 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 482
            M+R K R  ++E   +           GVAH+ +SFN+T I ++D+ G        G M  K  R +S+PYAA +AA+D   + ++ G+  L ++++              +SALRALA  G  I  I DVTPI
Sbjct:    1 MARDKTRTKRKERKNIAS---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAGRKAQDHGVKTLEVEVQG--------PGSGRESALRALAAIGFNITNIRDVTPI 116          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_RHOS5 (30S ribosomal protein S11 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 3
Query:   81 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 482
            M+R K R  ++E   +           GVAH+ +SFN+T I ++D+ G        G M  K  R +S+PYAA +AA+D + + +E G+  + ++++              +SALRALA +G+ I  I DVTP+
Sbjct:    1 MARDKTRMKRKERKNIAA---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAAKKAQEHGMKTIEVEVQG--------PGSGRESALRALAAAGLNITSIRDVTPM 116          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_RHOPB (30S ribosomal protein S11 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485
            G+AH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS + +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_RHOP5 (30S ribosomal protein S11 OS=Rhodopseudomonas palustris (strain BisA53) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485
            G+AH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS + +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_RHOP2 (30S ribosomal protein S11 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485
            G+AH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DV+ + +E G+  L +++               +SALRAL  SG  +  I DVT IP
Sbjct:   19 GIAHVNSSFNNTTITITDAQGNAIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVAKKAQEHGMRTLEVEVAG--------PGSGRESALRALQASGFTVTSIRDVTTIP 117          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_PARDP (30S ribosomal protein S11 OS=Paracoccus denitrificans (strain Pd 1222) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 46/134 (34.33%), Postives = 68/134 (50.75%), Query Frame = 3
Query:   81 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 482
            M+R K R  ++E   +           GVAH+ +SFN+T I ++D+ G        G M  K  R +S+PYAA +AA+D   + +E G+  L ++++              +SALRALA  G  I  I DVTPI
Sbjct:    1 MARDKTRIKRKERKNIAT---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAGKKAQEHGVRTLEVEVQG--------PGSGRESALRALAAVGFNITAIRDVTPI 116          
The following BLAST results are available for this feature:
BLAST of EH406293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
RS11_JANMA4.310e-1137.0430S ribosomal protein S11 OS=Janthinobacterium sp.... [more]
RS11_BRASO4.310e-1138.8930S ribosomal protein S11 OS=Bradyrhizobium sp. (s... [more]
RS11_BRASB4.310e-1138.8930S ribosomal protein S11 OS=Bradyrhizobium sp. (s... [more]
RS11_BRAJA4.310e-1138.8930S ribosomal protein S11 OS=Bradyrhizobium japoni... [more]
RS11_SILST5.630e-1133.5830S ribosomal protein S11 OS=Silicibacter sp. (str... [more]
RS11_RHOS55.630e-1132.8430S ribosomal protein S11 OS=Rhodobacter sphaeroid... [more]
RS11_RHOPB5.630e-1137.9630S ribosomal protein S11 OS=Rhodopseudomonas palu... [more]
RS11_RHOP55.630e-1137.9630S ribosomal protein S11 OS=Rhodopseudomonas palu... [more]
RS11_RHOP25.630e-1137.9630S ribosomal protein S11 OS=Rhodopseudomonas palu... [more]
RS11_PARDP5.630e-1134.3330S ribosomal protein S11 OS=Paracoccus denitrific... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DC11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406293 ID=EH406293; Name=EH406293; organism=Citrus clementina; type=EST; length=755bp
GATTGTTTAGGGTTTTCACATTTTCCTTTCGTCTAGGAACAAACCCTAGC
CTTCTCAATCCTTCTCGTGTTTTCGCAGGCATGTCGAGGAGAAAGAATAG
GGAGCCTAAGGAAGAGAATGTGACTCTAGGACCTGCTGTGAGAGATGGGG
AGCATGTCTTTGGAGTTGCCCACATCTTTGCATCGTTCAATGATACATTT
ATTCATGTGACTGATCTGTCAGGCAGAGAAACCCTTGTCCGTATCACTGG
TGGTATGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCTTACGCTGCCA
TGCTTGCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAATCACT
GCTCTTCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAACACC
CGGTCCAGGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGGATGA
AAATTGGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCACACGC
AGAAAGGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTCTTGTTTGTCCG
ATTGTCTTGTTTGTCCGATTGTCTTGTTTTATGCGGGCATTCTGAATGGG
ACAGTTGTTCCTTAAAGTTAGTTGAAGTTACTTTTCAATTTTGGAACTAA
TTTATAGTTTTATCTGTCGCTATTAAAAGATTTTATTTTCCTGCTTTTTG
TAAAAACAATAGGTGGCCTTGAGAGCATATGGCATTACTGGTGTCTTGCA
TTGCG
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