EH406293

Overview
NameEH406293
Unique NameEH406293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9647 contig Ccv1_Contig9647:29..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_METNO (30S ribosomal protein S11 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.685e-12
Identity = 43/110 (39.09%), Postives = 58/110 (52.73%), Query Frame = 3
Query:  156 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485
            V GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D   +  E G+  L +++               +SALRAL  +G  +  I DVTPIP
Sbjct:   17 VSGVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAGRKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTPIP 117          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_HYPNA (30S ribosomal protein S11 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.685e-12
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485
            G+ H+ +SFN+T + +TD  G       +G M  K  R +S+PYAA +AA+D + + KE G+  + +++R              +SALRAL  +G+ +  I D TPIP
Sbjct:   19 GIVHVNSSFNNTMVTITDAQGNTISWSSSGVMNFKGSR-KSTPYAAQMAAEDAAKKAKEHGLQTVEVRVRG--------PGSGRESALRALQAAGLTVTAINDTTPIP 117          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_SPHWW (30S ribosomal protein S11 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = 3
Query:  162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D   +  E G+  L ++++              +SALRAL   G  I  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNAIAWSSAGMMGFKGSR-KSTPYAAQVAAEDAGKKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFHITSIRDVTPIP 117          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_MARMM (30S ribosomal protein S11 OS=Maricaulis maris (strain MCS10) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11
Identity = 42/108 (38.89%), Postives = 57/108 (52.78%), Query Frame = 3
Query:  162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485
            GVAH+ ASFN+T + +TD  G        G M  K  R +S+PYAA +AA+D   +  E G+  + +K+               +SALRAL   G  I  I+DVTPIP
Sbjct:   19 GVAHVSASFNNTMVTITDAQGNAISWSSAGHMGFKGSR-KSTPYAAQMAAEDAGKKAMEHGMKTIEVKVSG--------PGSGRESALRALQSVGFTITTIQDVTPIP 117          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_DINSH (30S ribosomal protein S11 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11
Identity = 47/134 (35.07%), Postives = 68/134 (50.75%), Query Frame = 3
Query:   81 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 482
            M+R K R  K+E   +           GVAH+ +SFN+T I ++D+ G        G M  K  R +S+PYAA +AA+D   + +E G+  L ++++              +SALRALA  G  I  I DVTPI
Sbjct:    1 MARDKQRTKKKERKNIAA---------GVAHVNSSFNNTKILISDVQGNAIAWSSAGTMGFKGSR-KSTPYAAQMAAEDAGKKAQEHGVKTLEVQVQG--------PGSGRESALRALAAVGFNITAIRDVTPI 116          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_AZOSE (30S ribosomal protein S11 OS=Azoarcus sp. (strain EbN1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+      +E G+  L ++++              +SA+RAL   GMKI  I D+TPIP
Sbjct:   19 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKAAQECGVKNLEVRIKG--------PGPGRESAVRALNALGMKISSITDITPIP 117          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_ZYMMO (30S ribosomal protein S11 OS=Zymomonas mobilis GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = 3
Query:  162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D   +  E G+  L ++++              +SALRAL   G  I  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNAISWSSAGMMGFKGSR-KSTPYAAQVAAEDAGKKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFHITSIRDVTPIP 117          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_XANP2 (30S ribosomal protein S11 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11
Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 3
Query:  162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D + +  E G+  L +++               +SALRAL  +G  +  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAARKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFLVTSIRDVTPIP 117          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_RALEJ (30S ribosomal protein S11 OS=Ralstonia eutropha (strain JMP134) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485
            G+AH+ ASFN+T I +TD  G        GG   K  R +S+P+AA +AA++     ++ GI  L ++++              +SA+RAL   G+KI  IEDVTPIP
Sbjct:   22 GIAHVHASFNNTIITITDRQGNALSWATAGGQGFKGSR-KSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--------PGPGRESAVRALNALGIKIAIIEDVTPIP 120          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_RALEH (30S ribosomal protein S11 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485
            G+AH+ ASFN+T I +TD  G        GG   K  R +S+P+AA +AA++     ++ GI  L ++++              +SA+RAL   G+KI  IEDVTPIP
Sbjct:   22 GIAHVHASFNNTIITITDRQGNALSWATAGGQGFKGSR-KSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--------PGPGRESAVRALNALGIKIAIIEDVTPIP 120          
The following BLAST results are available for this feature:
BLAST of EH406293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
RS11_METNO8.685e-1239.0930S ribosomal protein S11 OS=Methylobacterium nodu... [more]
RS11_HYPNA8.685e-1235.1930S ribosomal protein S11 OS=Hyphomonas neptunium ... [more]
RS11_SPHWW1.134e-1139.8130S ribosomal protein S11 OS=Sphingomonas wittichi... [more]
RS11_MARMM1.134e-1138.8930S ribosomal protein S11 OS=Maricaulis maris (str... [more]
RS11_DINSH1.134e-1135.0730S ribosomal protein S11 OS=Dinoroseobacter shiba... [more]
RS11_AZOSE1.134e-1137.0430S ribosomal protein S11 OS=Azoarcus sp. (strain ... [more]
RS11_ZYMMO1.481e-1139.8130S ribosomal protein S11 OS=Zymomonas mobilis GN=... [more]
RS11_XANP21.481e-1138.8930S ribosomal protein S11 OS=Xanthobacter autotrop... [more]
RS11_RALEJ1.481e-1137.9630S ribosomal protein S11 OS=Ralstonia eutropha (s... [more]
RS11_RALEH1.481e-1137.9630S ribosomal protein S11 OS=Ralstonia eutropha (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2DC11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406293 ID=EH406293; Name=EH406293; organism=Citrus clementina; type=EST; length=755bp
GATTGTTTAGGGTTTTCACATTTTCCTTTCGTCTAGGAACAAACCCTAGC
CTTCTCAATCCTTCTCGTGTTTTCGCAGGCATGTCGAGGAGAAAGAATAG
GGAGCCTAAGGAAGAGAATGTGACTCTAGGACCTGCTGTGAGAGATGGGG
AGCATGTCTTTGGAGTTGCCCACATCTTTGCATCGTTCAATGATACATTT
ATTCATGTGACTGATCTGTCAGGCAGAGAAACCCTTGTCCGTATCACTGG
TGGTATGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCTTACGCTGCCA
TGCTTGCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAATCACT
GCTCTTCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAACACC
CGGTCCAGGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGGATGA
AAATTGGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCACACGC
AGAAAGGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTCTTGTTTGTCCG
ATTGTCTTGTTTGTCCGATTGTCTTGTTTTATGCGGGCATTCTGAATGGG
ACAGTTGTTCCTTAAAGTTAGTTGAAGTTACTTTTCAATTTTGGAACTAA
TTTATAGTTTTATCTGTCGCTATTAAAAGATTTTATTTTCCTGCTTTTTG
TAAAAACAATAGGTGGCCTTGAGAGCATATGGCATTACTGGTGTCTTGCA
TTGCG
back to top