EH406293
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_METNO (30S ribosomal protein S11 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.685e-12 Identity = 43/110 (39.09%), Postives = 58/110 (52.73%), Query Frame = 3 Query: 156 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485 V GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA+D + E G+ L +++ +SALRAL +G + I DVTPIP Sbjct: 17 VSGVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAGRKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTPIP 117
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_HYPNA (30S ribosomal protein S11 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.685e-12 Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485 G+ H+ +SFN+T + +TD G +G M K R +S+PYAA +AA+D + + KE G+ + +++R +SALRAL +G+ + I D TPIP Sbjct: 19 GIVHVNSSFNNTMVTITDAQGNTISWSSSGVMNFKGSR-KSTPYAAQMAAEDAAKKAKEHGLQTVEVRVRG--------PGSGRESALRALQAAGLTVTAINDTTPIP 117
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_SPHWW (30S ribosomal protein S11 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11 Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = 3 Query: 162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485 GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA+D + E G+ L ++++ +SALRAL G I I DVTPIP Sbjct: 19 GVAHVNASFNNTMITITDAQGNAIAWSSAGMMGFKGSR-KSTPYAAQVAAEDAGKKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFHITSIRDVTPIP 117
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_MARMM (30S ribosomal protein S11 OS=Maricaulis maris (strain MCS10) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11 Identity = 42/108 (38.89%), Postives = 57/108 (52.78%), Query Frame = 3 Query: 162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485 GVAH+ ASFN+T + +TD G G M K R +S+PYAA +AA+D + E G+ + +K+ +SALRAL G I I+DVTPIP Sbjct: 19 GVAHVSASFNNTMVTITDAQGNAISWSSAGHMGFKGSR-KSTPYAAQMAAEDAGKKAMEHGMKTIEVKVSG--------PGSGRESALRALQSVGFTITTIQDVTPIP 117
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_DINSH (30S ribosomal protein S11 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11 Identity = 47/134 (35.07%), Postives = 68/134 (50.75%), Query Frame = 3 Query: 81 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 482 M+R K R K+E + GVAH+ +SFN+T I ++D+ G G M K R +S+PYAA +AA+D + +E G+ L ++++ +SALRALA G I I DVTPI Sbjct: 1 MARDKQRTKKKERKNIAA---------GVAHVNSSFNNTKILISDVQGNAIAWSSAGTMGFKGSR-KSTPYAAQMAAEDAGKKAQEHGVKTLEVQVQG--------PGSGRESALRALAAVGFNITAIRDVTPI 116
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_AZOSE (30S ribosomal protein S11 OS=Azoarcus sp. (strain EbN1) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11 Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 3 Query: 162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485 G+AH+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ +E G+ L ++++ +SA+RAL GMKI I D+TPIP Sbjct: 19 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKAAQECGVKNLEVRIKG--------PGPGRESAVRALNALGMKISSITDITPIP 117
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_ZYMMO (30S ribosomal protein S11 OS=Zymomonas mobilis GN=rpsK PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11 Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = 3 Query: 162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485 GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA+D + E G+ L ++++ +SALRAL G I I DVTPIP Sbjct: 19 GVAHVNASFNNTMITITDAQGNAISWSSAGMMGFKGSR-KSTPYAAQVAAEDAGKKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFHITSIRDVTPIP 117
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_XANP2 (30S ribosomal protein S11 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11 Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 3 Query: 162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485 GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA+D + + E G+ L +++ +SALRAL +G + I DVTPIP Sbjct: 19 GVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAARKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFLVTSIRDVTPIP 117
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_RALEJ (30S ribosomal protein S11 OS=Ralstonia eutropha (strain JMP134) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11 Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485 G+AH+ ASFN+T I +TD G GG K R +S+P+AA +AA++ ++ GI L ++++ +SA+RAL G+KI IEDVTPIP Sbjct: 22 GIAHVHASFNNTIITITDRQGNALSWATAGGQGFKGSR-KSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--------PGPGRESAVRALNALGIKIAIIEDVTPIP 120
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_RALEH (30S ribosomal protein S11 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11 Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 162 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 485 G+AH+ ASFN+T I +TD G GG K R +S+P+AA +AA++ ++ GI L ++++ +SA+RAL G+KI IEDVTPIP Sbjct: 22 GIAHVHASFNNTIITITDRQGNALSWATAGGQGFKGSR-KSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--------PGPGRESAVRALNALGIKIAIIEDVTPIP 120 The following BLAST results are available for this feature:
BLAST of EH406293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 169
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Sequences
The
following sequences are available for this feature:
EST sequence >EH406293 ID=EH406293; Name=EH406293; organism=Citrus clementina; type=EST; length=755bpback to top |