EH406307

Overview
NameEH406307
Unique NameEH406307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EH406307 vs. ExPASy Swiss-Prot
Match: SUT3_STYHA (Low affinity sulfate transporter 3 OS=Stylosanthes hamata GN=ST3 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 9.563e-11
Identity = 27/72 (37.50%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:  175 VILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNPNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCL 390
            +I++M  +T +D+S + AL++L+++  SR +++A+ NP  EV+  L  +  VD IGKE  F+   +AV  CL
Sbjct:  565 IIIDMTDLTNVDTSGILALEELHKKLLSRGVELAMVNPRWEVIHKLKVANFVDKIGKERVFLTVAEAVDACL 636

HSP 2 Score: 27.335 bits (59), Expect = 9.563e-11
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 3 
Query:   12 QYPEAYTYHGIVIVRIDA-PIYFANISFLK 98
            QYP A T  GI+++RI +  + FAN  F++
Sbjct:  510 QYPMAVTTPGILVIRISSGSLCFANAGFVR 539
The following BLAST results are available for this feature:
BLAST of EH406307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SUT3_STYHA9.563e-1137.50Low affinity sulfate transporter 3 OS=Stylosanthes... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3AE12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406307 ID=EH406307; Name=EH406307; organism=Citrus clementina; type=EST; length=762bp
GAAACACTCAGCAATACCCAGAAGCATATACTTACCACGGAATAGTAATC
GTTCGCATAGATGCACCTATCTACTTTGCAAATATAAGTTTCCTAAAAGT
ACAGGCTACGGGAATATGAAGTTGTTGTTGATAGATCTACAAGGCGTGGA
CCGGAAGTTGAAAGTATTTACTTTGTGATCTTAGAGATGGCACCTGTTAC
CTATATCGATTCTAGTGCTGTTCAGGCCTTGAAAGACTTGTATCAAGAAT
ACAAATCAAGGGACATTCAGATTGCCATTTCCAATCCGAATCATGAGGTT
CTCCTGACTTTGTCCAAATCGGGTGTTGTTGATCTGATTGGCAAGGAGTG
GTACTTTGTGAGAGCCCATGATGCCGTTCAAGTTTGCCTCCAGCATGTAC
AGAGCTTGAAAGAAACTGCTAATGCACCTTATCCTTTACCTGATGACAAA
CTAAGTTTTCTCCAGAGATTACTCAAATCTCGTGGGGAAGATTTATCAAT
TGCTGAGCTAGAGTCGGGTGCTCAAAGGCCTCCAGATTTCAAGGACACGG
ACCCTAAGTTGGAGCCCCTACTATATCGCAAGTCGTGAATTTGCATTCTT
GCTTCTCCCTCAAACATAAAATGATGCCAATTTTTAGCAAGGCATGTAAA
TGTCTTTTGTCCGGCTGCAGCCATTAAAATTTGATTGTTTCTTGTAGTTA
GTCTCCCTTAAGTGTAAAATGTAATGCCATATGCTGCAAATATAGACTTC
GATTTCTTGTAA
back to top