FC868488

Overview
NameFC868488
Unique NameFC868488
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14169 contig Ccv1_Contig14169:4..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868488 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.747e-68
Identity = 130/185 (70.27%), Postives = 142/185 (76.76%), Query Frame = 3
Query:   60 MATSAIQQSAFAGQTALRQSNEFVRKVGVADG----GRITMRRTVK-----STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 587
            MA+  I   AFAG           + +GV  G     R+TMR+        S   S WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYRI
Sbjct:    1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRI 185          
BLAST of FC868488 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.747e-68
Identity = 125/179 (69.83%), Postives = 146/179 (81.56%), Query Frame = 3
Query:   63 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS----TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 587
            ++ A+      G+     +N   +++G   G R TMR++  +    +  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI
Sbjct:    4 SSMALSSPTLTGKPVETSANPSSQELG---GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 179          
BLAST of FC868488 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.479e-67
Identity = 128/183 (69.95%), Postives = 147/183 (80.33%), Query Frame = 3
Query:   60 MATSAIQQSAFAGQTALRQS---NEFVRKVGVADGGRITMRRTVKS----TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 587
            MA S+    A +  T   +    N   +++G A   R TMR++  +    +  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI
Sbjct:    1 MAASSSSSMALSSPTLAGKQLKLNPSSQELGAA---RFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 180          
BLAST of FC868488 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 1.932e-67
Identity = 131/179 (73.18%), Postives = 142/179 (79.33%), Query Frame = 3
Query:   63 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQ---SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 587
            AT A+   A AG+ A +   E          GRITMR++  K  P    S WYG DR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI
Sbjct:    4 ATMALSSPALAGKAAAKVFGE----------GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI 172          
BLAST of FC868488 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.523e-67
Identity = 121/146 (82.88%), Postives = 131/146 (89.73%), Query Frame = 3
Query:  156 GRITMRRTVKSTPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 587
            GR++MR+T   T  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEA WFKAG+QIFSEGGLDYLGN +LIHAQSILAIWA QV+LMG VEGYRI
Sbjct:   11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRI 156          
BLAST of FC868488 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 8.116e-66
Identity = 125/169 (73.96%), Postives = 134/169 (79.29%), Query Frame = 3
Query:  159 RITMRRTVK-----STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDHL 650
            RITMR+T       ++  S WYG DR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI                AFD L
Sbjct:   29 RITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPL 197          
BLAST of FC868488 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.384e-65
Identity = 115/134 (85.82%), Postives = 126/134 (94.03%), Query Frame = 3
Query:  186 STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 587
            ++  S W+GPD  KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI
Sbjct:    6 ASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 139          
BLAST of FC868488 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.808e-65
Identity = 123/178 (69.10%), Postives = 141/178 (79.21%), Query Frame = 3
Query:   66 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 587
            T ++  S+FAG+      +  +  +G A   R+ MR+T     Q    S WYG DR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEA WFKAG+QIFS+GGLDYLGNP+L+HAQS+LAIWACQVVLMG VEGYRI
Sbjct:    5 TMSLSSSSFAGKAVKNLPSSAL--IGDA---RVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRI 177          
BLAST of FC868488 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.609e-61
Identity = 120/179 (67.04%), Postives = 132/179 (73.74%), Query Frame = 3
Query:   63 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQ---SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 587
            AT AI   A  G+ A    + F         GRITMR+T  K  P    S WYG DR  YLGP S   PSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIH RWA+   LGCVFPE+L++NGVKFGE VWFKAG+QIFSEGGL + GNP+L+HAQSILAIWACQVVLMG VEGY +
Sbjct:    4 ATMAITSRALVGKPAAGTRDVFGE-------GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHV 175          
BLAST of FC868488 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.027e-60
Identity = 122/177 (68.93%), Postives = 138/177 (77.97%), Query Frame = 3
Query:   63 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 587
            +T A+  S+ AGQ      +    ++GV   GR++MR+T   T  S   WYGPDR KYLGPFS + PSYLTGEF G        LSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYRI
Sbjct:    4 STMALSSSSLAGQAMKLAPS--TPELGV---GRVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRI 167          
The following BLAST results are available for this feature:
BLAST of FC868488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB2B_PINSY1.747e-6870.27Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB28_PEA1.747e-6869.83Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PEA1.479e-6769.95Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_ORYSJ1.932e-6773.18Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN2.523e-6782.88Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_ORYSJ8.116e-6673.96Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_PEA1.384e-6585.82Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_WHEAT1.808e-6569.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB48_MAIZE4.609e-6167.04Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_SOYBN1.027e-6068.93Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC31001A01EF AbioticL1 Citrus clementina cDNA clone C31001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868488 ID=FC868488; Name=FC868488; organism=Citrus clementina; type=EST; length=660bp
GATTCAGAGTGCGAAAAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGCA
TAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCA
GACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTG
ACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGC
ATCTGGTATGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCA
AACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATA
CCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTA
GAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTT
CCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGT
TCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGGC
AACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCA
GGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCCTC
TTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCACTTG
GTTTGGCTGA
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