FC868498

Overview
NameFC868498
Unique NameFC868498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_THECE (Elongation factor 1-alpha OS=Thermococcus celer GN=tuf PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.260e-46
Identity = 106/217 (48.85%), Postives = 134/217 (61.75%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPIS---GSRVTHD*EVYHLDWYRGPT 725
            M KEK HINIV IGHVD GKSTT G L++    I + +I++FE E  E  K SFK+AWV+D+LK ERERGITID+A  KFET   Y T+IDAPGHRDF+KNMITG SQAD AVL++  T G          QT+EHA LA TLG+  ++   NKMD     Y + ++  + ++V   L  +GY  +     PIS   G  V    +   + WY GPT
Sbjct:    1 MAKEKPHINIVFIGHVDHGKSTTIGRLLFDTANIPENIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAVTDGVMP-------QTKEHAFLARTLGINNILVAVNKMDMV--NYDEKKFKAVAEQVKKLLMMLGY--KNFPIIPISAWEGDNVVKKSD--KMPWYNGPT 202          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.952e-46
Identity = 104/220 (47.27%), Postives = 135/220 (61.36%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEV-SSYLKKVGYTPRKSHSCPIS---GSRVTHD*EVYHLDWYRGPT 725
            M K K  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD AVL+  +D    G +       QTREH  L  TLGV+Q+    NKMD  T  +S+A Y+E+ K +    LK +G+ P + +  P++   G  V    E     WY+GPT
Sbjct:    1 MAKTKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVNVDDAKSGIQP------QTREHVFLIRTLGVRQLAVAVNKMD--TVNFSEADYNELKKMIGDQLLKMIGFNPEQINFVPVASLHGDNVFKKSE--RTPWYKGPT 210          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: ERF3_ZYGRO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Zygosaccharomyces rouxii GN=SUP35 PE=3 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.856e-46
Identity = 93/217 (42.86%), Postives = 135/217 (62.21%), Query Frame = 3
Query:   96 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYT--------PRKSHSCPISGSRVTHD*EVYHLDWYRGP 722
            K H++I+ +GHVD+GKST  G+++Y  G +DKR +E++E+EA +  K+ +  +WV+D  + ER+ G TI++    FET K   T++DAPGH+ ++  MI G SQAD  +L+I +  G +E G  K GQTREHALLA T GV ++I   NKMD  T  +SK RYD+ VK +S++LK +GY         P   +S    G+RV    +     WY GP
Sbjct:  235 KDHMSIIFMGHVDAGKSTMGGNILYMTGSVDKRTVEKYEREAKDAGKQGWYLSWVMDTNREERDDGKTIEVGRAYFETEKRRYTILDAPGHKMYVSEMIGGASQADVGILVISARKGEYETGFEKGGQTREHALLAKTQGVNKLIVTINKMDDPTVNWSKERYDQCVKNLSNFLKAIGYNVKEEVVFMPVSGYSGAGLGTRV----DPKECPWYDGP 447          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: ERF3_YEAST (Eukaryotic peptide chain release factor GTP-binding subunit OS=Saccharomyces cerevisiae GN=SUP35 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.856e-46
Identity = 92/214 (42.99%), Postives = 134/214 (62.62%), Query Frame = 3
Query:   96 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKS-HSCPI---SGSRVTHD*EVYHLDWYRGPT 725
            K H++++ +GHVD+GKST  G+L+Y  G +DKR IE++E+EA +  ++ +  +WV+D  K ER  G TI++    FET K   T++DAPGH+ ++  MI G SQAD  VL+I +  G +E G  + GQTREHALLA T GV +M+   NKMD  T  +SK RYD+ V  VS++L+ +GY  +      P+   SG+ +    +     WY GPT
Sbjct:  258 KDHVSLIFMGHVDAGKSTMGGNLLYLTGSVDKRTIEKYEREAKDAGRQGWYLSWVMDTNKEERNDGKTIEVGKAYFETEKRRYTILDAPGHKMYVSEMIGGASQADVGVLVISARKGEYETGFERGGQTREHALLAKTQGVNKMVVVVNKMDDPTVNWSKERYDQCVSNVSNFLRAIGYNIKTDVVFMPVSGYSGANLKDHVDPKECPWYTGPT 471          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.856e-46
Identity = 103/221 (46.61%), Postives = 135/221 (61.09%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEV-SSYLKKVGYTPRKSHSCPISGSRVTHD*EVYHLD----WYRGPT 725
            M K K  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD AVL+  +D    G +       QTREH  L  TLGV+Q+    NKMD  T  +S+A Y+E+ K +    LK +G+ P + +  P++     H   V+       WY+GPT
Sbjct:    1 MAKTKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVNVDDAKSGIQP------QTREHVFLIRTLGVRQLAVAVNKMD--TVNFSEADYNELKKMIGDQLLKMIGFNPEQINFVPVAS---LHGDNVFKKSERNPWYKGPT 210          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_METMP (Elongation factor 1-alpha OS=Methanococcus maripaludis GN=tuf PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.590e-46
Identity = 105/220 (47.73%), Postives = 134/220 (60.91%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEV-SSYLKKVGYTPRKSHSCPIS---GSRVTHD*EVYHLDWYRGPT 725
            M KEK  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD AVL+  +D    G +       QTREH  L+ TLG+ Q+    NKMD  T  +S+A Y+E+ K +    LK VG+ P      P++   G  V    E  +  WY GPT
Sbjct:    1 MAKEKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVNVDDAKSGIQP------QTREHVFLSRTLGITQLAVAINKMD--TVNFSEADYNEMKKMLGDQLLKMVGFNPDNIDFIPVASLLGDNVFKKSE--NTPWYNGPT 210          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.122e-45
Identity = 103/221 (46.61%), Postives = 133/221 (60.18%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEV-SSYLKKVGYTPRKSHSCPISGSRVTHD*EVY----HLDWYRGPT 725
            M KEK  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD A+L+  +D    G +       QTREH  L+ TLG+ Q+    NKMD  T  +S+A Y+E+ K +    LK VG+ P      P++     H   V+       WY GPT
Sbjct:    1 MAKEKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAILVVNVDDAKSGIQP------QTREHVFLSRTLGISQLAVAINKMD--TVNFSEADYNEMKKMLGDQLLKMVGFNPANITFVPVAS---LHGDNVFKKSDRTPWYNGPT 210          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.465e-45
Identity = 103/221 (46.61%), Postives = 134/221 (60.63%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEV-SSYLKKVGYTPRKSHSCPISGSRVTHD*EVY----HLDWYRGPT 725
            M KEK  +N+  IGHVD+GKSTT G L+   G ID ++I R +KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD A+L+  +D    G +       QTREH  L+ TLG+ Q+    NKMD  T  +S+A Y+E+ K +    LK VG+ P      P++     H   V+       WY GPT
Sbjct:    1 MAKEKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLKKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAILVVNVDDAKSGIQP------QTREHVFLSRTLGISQLAVAINKMD--TVNFSEADYNEMKKMLGDQLLKMVGFNPDNITFVPVAS---LHGDNVFKKSDKTPWYNGPT 210          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.914e-45
Identity = 103/221 (46.61%), Postives = 133/221 (60.18%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEV-SSYLKKVGYTPRKSHSCPISGSRVTHD*EVY----HLDWYRGPT 725
            M KEK  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD A+L+  +D    G +       QTREH  L+ TLG+ Q+    NKMD  T  +S+A Y+E+ K +    LK VG+ P      P++     H   V+       WY GPT
Sbjct:    1 MAKEKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAILVVNVDDAKSGIQP------QTREHVFLSRTLGISQLAVAINKMD--TVNFSEADYNEMKKMLGDQLLKMVGFNPDNITFVPVAS---LHGDNVFKKSDKTPWYNGPT 210          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: ERF3_KLULA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Kluyveromyces lactis GN=SUP35 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.263e-45
Identity = 92/214 (42.99%), Postives = 133/214 (62.15%), Query Frame = 3
Query:   96 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKS-HSCPIS---GSRVTHD*EVYHLDWYRGPT 725
            K H++I+ +GHVD+GKST  G+L+Y  G +DKR +E++E+EA E  ++ +  +WV+D  K ER  G TI++    FET K   T++DAPGH+ ++  MI G SQAD  +L+I +  G +E G  K GQTREHALLA T GV +MI   NKMD  T  + K RYD  V  ++++LK VGY  ++     P+S   G+ +    +     WY GP+
Sbjct:  272 KDHVSIIFMGHVDAGKSTMGGNLLYLTGSVDKRTVEKYEREAKEAGRQGWYLSWVMDTNKEERNDGKTIEVGRAYFETEKRRYTILDAPGHKMYVSEMIGGASQADIGILVISARKGEYETGFEKGGQTREHALLAKTQGVNKMIVVINKMDDPTVGWDKERYDHCVGNLTNFLKAVGYNVKEDVIFMPVSGYTGAGLKERVDPKDCPWYTGPS 485          
The following BLAST results are available for this feature:
BLAST of FC868498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_THECE2.260e-4648.85Elongation factor 1-alpha OS=Thermococcus celer GN... [more]
EF1A_METVS2.952e-4647.27Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
ERF3_ZYGRO3.856e-4642.86Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_YEAST3.856e-4642.99Eukaryotic peptide chain release factor GTP-bindin... [more]
EF1A_METVA3.856e-4646.61Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METMP8.590e-4647.73Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM61.122e-4546.61Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM51.465e-4546.61Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM71.914e-4546.61Elongation factor 1-alpha OS=Methanococcus maripal... [more]
ERF3_KLULA4.263e-4542.99Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionC31001B02EF AbioticL1 Citrus clementina cDNA clone C31001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868498 ID=FC868498; Name=FC868498; organism=Citrus clementina; type=EST; length=728bp
GACTCTTTGCCCTCCCTCTTTTCTTGCTTGCTCTGCGGCTAGGTTTCAAT
TGTCTCTTCGAAGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGAC
TCACATCAACATTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCA
CCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATC
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCAT
TCGTGCCCNATCTCTGGTTCGAGGGTGACACATGATTGAGAGGTCTACCA
CCTTGACTGGTACAGGGGTCCAACCTGC
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