FC868498

Overview
NameFC868498
Unique NameFC868498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: ERF3_DICDI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Dictyostelium discoideum GN=erf3 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.240e-44
Identity = 93/214 (43.46%), Postives = 137/214 (64.02%), Query Frame = 3
Query:   96 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKS-HSCPISG---SRVTHD*EVYHLDWYRGPT 725
            + H+NIV +GHVD+GKST +G ++   G +D   + ++E+EA E ++  + YA+++D  + ER +G T+++    FETTK   T++DAPGHR ++ NMI G +QAD  +L+I S  G FEAG+ + GQT EHA LA  +G+K ++   NKMD  T K+SKARYDEI  +++ +LKK G+ P+K  H  P SG     V         DWY GP+
Sbjct:  115 REHLNIVFLGHVDAGKSTLSGSIMVLTGQVDPHTLAKYEREAKENHREGWIYAYIMDTNEEERTKGKTVEVGRAHFETTKKRYTILDAPGHRLYVPNMIIGAAQADVGILVISSKKGEFEAGV-EGGQTIEHARLAKMIGIKYLVVFVNKMDEPTVKWSKARYDEITDKLTVHLKKCGWNPKKDFHFVPGSGYGTLNVLAPLAPGVCDWYSGPS 327          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.240e-44
Identity = 95/217 (43.78%), Postives = 135/217 (62.21%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPIS---GSRVTHD*EVYHLDWYRGPT 725
            M ++K H N+ VIGHVD GKST  G L+++ G + + VIE++ +EA E  K  F++A+V+D L  ERERG+TIDIA  +F+T +YY T++D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  LA TLG+ ++I   NKMD     Y + +Y  +V EV+  L++V +    +   P S   G  V+   E  +  WY GP+
Sbjct:    1 MSEDKPHQNLAVIGHVDHGKSTMVGRLLFETGSVPEHVIEQYREEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFDTDEYYFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG-------VQPQTQEHVFLARTLGIDELIIAVNKMDLV--DYDENKYKAVVDEVNQLLEQVRFNTEDAKFIPTSAFEGDNVSEASE--NTSWYDGPS 206          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: ERF3_PICPI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Pichia pinus GN=SUP2 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.620e-44
Identity = 91/217 (41.94%), Postives = 133/217 (61.29%), Query Frame = 3
Query:   96 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPISG-------SRVTHD*EVYHLDWYRGPT 725
            K H++I+ +GHVD+GKST  G+L++  G +DKR +E++E+EA +  ++ +  +W++D  K ER  G TI++    FET K   T++DAPGH+ +I  MI G SQAD  VL+I S  G +EAG  + GQ+REHA+LA T GV +++   NKMD  T  +SK RY+E   +++ YLK VGY        P+SG        RV+         WY GP+
Sbjct:  316 KDHMSIIFMGHVDAGKSTMGGNLLFLTGAVDKRTVEKYEREAKDAGRQGWYLSWIMDTNKEERNDGKTIEVGKSYFETDKRRYTILDAPGHKLYISEMIGGASQADVGVLVISSRKGEYEAGFERGGQSREHAILAKTQGVNKLVVVINKMDDPTVNWSKERYEECTTKLAMYLKGVGYQKGDVLFMPVSGYTGAGLKERVSQK----DAPWYNGPS 528          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: ERF3_CANMA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.116e-44
Identity = 88/213 (41.31%), Postives = 130/213 (61.03%), Query Frame = 3
Query:   96 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPIS---GSRVTHD*EVYHLDWYRGPT 725
            K H++I+ +GHVD+GKST  G+++Y  G +DKR +E++E+EA +  ++ +  +WV+D  K ER  G TI++    FET K   T++DAPGH+ ++  MI G SQAD  +L+I +  G +E G  K GQTREHALLA T GV ++I   NKMD  T  +SK RY E   ++  +LK +GY      + P+S   G+ +          WY GP+
Sbjct:  287 KDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVEKYEREAKDAGRQGWYLSWVMDTNKEERNDGKTIEVGKAYFETDKRRYTILDAPGHKMYVSEMIGGASQADVGILVISARKGEYETGFEKGGQTREHALLAKTQGVNKIIVVVNKMDDPTVNWSKERYQECTTKLGVFLKGIGYNKDDIINMPVSGYTGAGLKDRVNPKDCPWYEGPS 499          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: ERF3_CANAL (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida albicans GN=SUP35 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.116e-44
Identity = 88/213 (41.31%), Postives = 132/213 (61.97%), Query Frame = 3
Query:   96 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPIS---GSRVTHD*EVYHLDWYRGPT 725
            K H++I+ +GHVD+GKST  G+++Y  G +DKR +E++E+EA +  ++ +  +WV+D  K ER  G TI++    FET K   T++DAPGH+ ++  MI G SQAD  +L+I +  G +E G  K GQTREHALLA T GV ++I   NKMD +T  +SK RY E   ++ ++LK +GY        P+S   G+ +    +     WY GP+
Sbjct:  290 KDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVEKYEREAKDAGRQGWYLSWVMDTNKEERNDGKTIEVGKAYFETDKRRYTILDAPGHKMYVSEMIGGASQADVGILVISARKGEYETGFEKGGQTREHALLAKTQGVNKIIVVVNKMDDSTVGWSKERYQECTTKLGAFLKGIGYAKDDIIYMPVSGYTGAGLKDRVDPKDCPWYDGPS 502          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: HBS1_YEAST (Elongation factor 1 alpha-like protein OS=Saccharomyces cerevisiae GN=HBS1 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.763e-44
Identity = 88/211 (41.71%), Postives = 131/211 (62.09%), Query Frame = 3
Query:  102 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPISGSRVTHD*EVYHLD----WYRGP 722
            H++ VV+GHVD+GKST  G L+Y L  +++  + + ++E+  M K SFK+AW++D+   ERERG+T+ I    F T +   T++DAPGHRDF+ N I G SQAD A+L +D +T  FE+G   DGQT+EH LLA +LG+  +I   NKMD     +S+ R++EI  ++  YL  +G+     +  PISG       ++ + D    WY GP
Sbjct:  167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD--NVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGP 375          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 4.713e-44
Identity = 91/215 (42.33%), Postives = 134/215 (62.33%), Query Frame = 3
Query:   96 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV-GYTPRKS-HSCPIS---GSRVTHD*EVYHLDWYRGPT 725
            K H+NIV IGHVD+GKST  G++++  G +DKR +E+ E+EA E  K S+  +W LD    ERE+G T+++    FET     +++DAPGH+ ++ NMI G SQAD  VL+I +  G FEAG  + GQTREHA+LA T G+  ++   NKMD  + ++S+ RY E V ++S +L++V GY  +      P+S   G  V    +     WY+GP+
Sbjct:  236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPS 450          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_NANEQ (Elongation factor 1-alpha OS=Nanoarchaeum equitans GN=tuf PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.040e-44
Identity = 99/217 (45.62%), Postives = 133/217 (61.29%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPISGSRVTHD*EVYHLD---WYRGPT 725
            M +EK HIN+V IGHVD GKSTT G L Y LG I +  +E+  +EA +  K  F +A+++D+ K ER RG+TIDIA  + ET   Y T++DAPGH+DF+KNMITG SQAD AVL++ +  G  E       QT+EHA+LA T G+ Q+I   NKMD     Y + R++E+  +V   LK +GY   ++    I G+    D  V   D   WY GPT
Sbjct:    1 MPREKPHINVVFIGHVDHGKSTTVGRLKYDLGLIPESELEKIREEAKKYGKEEFVFAYLMDRQKEERARGVTIDIAHTELETPHNYITIVDAPGHKDFVKNMITGASQADAAVLVVAADDGVQE-------QTQEHAVLARTFGINQIIVYINKMDKV--NYDQKRFEEVKNQVLKLLKMIGYKD-ENIIAVIPGASFHGDNVVKKSDKMPWYNGPT 207          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_HALWD (Elongation factor 1-alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=tuf PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.371e-43
Identity = 94/214 (43.93%), Postives = 131/214 (61.21%), Query Frame = 3
Query:   93 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPIS---GSRVTHD*EVYHLDWYRGPT 725
            +K H N+ +IGHVD GKST  G L+++ G + + VIE+  +EA E  K  F++A+V+D L  ERERG+TIDIA  +F+T  YY T++D PGHRDF+KNMITG SQAD AVL++ +  G          QTREH  LA TLG+ ++I   NKMD     YS+  Y+++  EV   LK+V +    +   PIS   G  V    +  +  W+ GP+
Sbjct:    3 DKPHQNLAIIGHVDHGKSTLVGRLLFETGSVPEHVIEQHREEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFDTEDYYFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG-------VAPQTREHVFLARTLGINELIIGVNKMDIV--DYSEETYEDVKTEVDKLLKQVQFNANDAKYIPISAFEGDNVAESSD--NTSWFDGPS 205          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: HBS1_SCHPO (Elongation factor 1 alpha-like protein OS=Schizosaccharomyces pombe GN=hbs1 PE=2 SV=4)

HSP 1 Score: 176.022 bits (445), Expect = 1.791e-43
Identity = 94/214 (43.93%), Postives = 131/214 (61.21%), Query Frame = 3
Query:   96 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYTPRKSHSCP---ISGSRVTHD*EVYHLDWYRGPT 725
            K  +++VV GHVDSGKST  G ++++LG I+ R +++   EAA   K SF YAW+LD  + ER RG+T+D+A   FE+ K    + DAPGHRDFI  MI G S AD AVL++DS+   FE G  ++GQTREHA L   LG+ +++   NK+D  +  +S+ R+ EI   VS +L K VG+     H  P   ISG+ +          WY+GPT
Sbjct:  175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPT 386          
The following BLAST results are available for this feature:
BLAST of FC868498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ERF3_DICDI1.240e-4443.46Eukaryotic peptide chain release factor GTP-bindin... [more]
EF1A_NATPD1.240e-4443.78Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]
ERF3_PICPI1.620e-4441.94Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_CANMA2.116e-4441.31Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_CANAL2.116e-4441.31Eukaryotic peptide chain release factor GTP-bindin... [more]
HBS1_YEAST2.763e-4441.71Elongation factor 1 alpha-like protein OS=Saccharo... [more]
ERF3_SCHPO4.713e-4442.33Eukaryotic peptide chain release factor GTP-bindin... [more]
EF1A_NANEQ8.040e-4445.62Elongation factor 1-alpha OS=Nanoarchaeum equitans... [more]
EF1A_HALWD1.371e-4343.93Elongation factor 1-alpha OS=Haloquadratum walsbyi... [more]
HBS1_SCHPO1.791e-4343.93Elongation factor 1 alpha-like protein OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionC31001B02EF AbioticL1 Citrus clementina cDNA clone C31001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868498 ID=FC868498; Name=FC868498; organism=Citrus clementina; type=EST; length=728bp
GACTCTTTGCCCTCCCTCTTTTCTTGCTTGCTCTGCGGCTAGGTTTCAAT
TGTCTCTTCGAAGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGAC
TCACATCAACATTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCA
CCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATC
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCAT
TCGTGCCCNATCTCTGGTTCGAGGGTGACACATGATTGAGAGGTCTACCA
CCTTGACTGGTACAGGGGTCCAACCTGC
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