FC868498

Overview
NameFC868498
Unique NameFC868498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: ERF3_DEBHA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Debaryomyces hansenii GN=SUP35 PE=3 SV=4)

HSP 1 Score: 174.096 bits (440), Expect = 6.806e-43
Identity = 84/213 (39.44%), Postives = 131/213 (61.50%), Query Frame = 3
Query:   96 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPIS---GSRVTHD*EVYHLDWYRGPT 725
            K H++I+ +GHVD+GKST  G+++Y  G +DKR ++++E+EA +  ++ +  +WV+D  K ER  G TI++    FET K   T++DAPGH+ ++  MI G SQAD  +L+I +  G +E G  K GQTREHALLA T GV ++I   NKMD  T  +++ RY + + ++ ++LK +GY        P+S   G+ +          WY GP+
Sbjct:  276 KDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVDKYEREAKDAGRQGWYLSWVMDTNKEERSDGKTIEVGKAYFETEKRRYTILDAPGHKMYVSEMIGGASQADVGILVISARKGEYETGFEKGGQTREHALLAKTQGVNKIIVVVNKMDDPTVGWAEDRYKDCITKLGTFLKGIGYAKDDIIFMPVSGYTGAGIKDRVNPKDCPWYSGPS 488          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_HALSA (Elongation factor 1-alpha OS=Halobacterium salinarium GN=tuf PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.161e-42
Identity = 95/214 (44.39%), Postives = 130/214 (60.75%), Query Frame = 3
Query:   93 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPISGSRVTHD*EVYHLD---WYRGPT 725
            +  H N+ VIGHVD GKST  G L+Y+ G + + VIE+ ++EA E  K  F++A+V+D L  ERERG+TIDIA  +F T +Y  T++D PGHRDF+KNMITG SQAD AVL++ +  G          QTREH  L+ TLG+ ++I   NKMD     Y +++Y+E+V  V     +VG+ P  +    I+ S    D    H D   WY GPT
Sbjct:    3 DNRHQNLAVIGHVDHGKSTMVGRLLYETGSVPEHVIEQHKEEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFTTDEYEFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG-------VAPQTREHVFLSRTLGIDELIVAVNKMDVV--DYDESKYNEVVSGVKDLFGQVGFNPDDAKF--IATSAFEGDNVSDHSDNTPWYDGPT 205          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_HALS3 (Elongation factor 1-alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=tuf PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.161e-42
Identity = 95/214 (44.39%), Postives = 130/214 (60.75%), Query Frame = 3
Query:   93 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPISGSRVTHD*EVYHLD---WYRGPT 725
            +  H N+ VIGHVD GKST  G L+Y+ G + + VIE+ ++EA E  K  F++A+V+D L  ERERG+TIDIA  +F T +Y  T++D PGHRDF+KNMITG SQAD AVL++ +  G          QTREH  L+ TLG+ ++I   NKMD     Y +++Y+E+V  V     +VG+ P  +    I+ S    D    H D   WY GPT
Sbjct:    3 DNRHQNLAVIGHVDHGKSTMVGRLLYETGSVPEHVIEQHKEEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFTTDEYEFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG-------VAPQTREHVFLSRTLGIDELIVAVNKMDVV--DYDESKYNEVVSGVKDLFGQVGFNPDDAKF--IATSAFEGDNVSDHSDNTPWYDGPT 205          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_HALMA (Elongation factor 1-alpha OS=Haloarcula marismortui GN=tuf PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.516e-42
Identity = 91/212 (42.92%), Postives = 129/212 (60.85%), Query Frame = 3
Query:   93 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPIS---GSRVTHD*EVYHLDWYRG 719
            ++ H N+ +IGHVD GKST  G L+Y+ G + + VIE+ ++EA E  K  F++A+V+D L  ERERG+TIDIA  +F T  Y  T++D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  LA TLG+ ++I   NKMD     Y ++ Y ++V+EV   L +V +    +   P+S   G  +  + E  H  WY G
Sbjct:    3 DEQHQNLAIIGHVDHGKSTLVGRLLYETGSVPEHVIEQHKEEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFSTDTYDFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG-------VQPQTQEHVFLARTLGIGELIVAVNKMDLV--DYGESEYKQVVEEVKDLLTQVRFDSENAKFIPVSAFEGDNIAEESE--HTGWYDG 203          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_METKA (Elongation factor 1-alpha OS=Methanopyrus kandleri GN=tuf PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.189e-41
Identity = 95/217 (43.78%), Postives = 127/217 (58.53%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPIS---GSRVTHD*EVYHLDWYRGPT 725
            M KEK HIN+  IGHVD GKST  G L+Y  G I+ +          ++ +   K+  ++D L+ ERERG+TID+A  KFET  Y  T++D PGHRDF+KNMITG SQAD A+L++ +  G          QT+EHA LA TLG+ Q+I   NKMD     Y + RY+E+ +EV+  LK +GY   +    PIS   G  V    +  +  WY GPT
Sbjct:    1 MAKEKEHINLAFIGHVDHGKSTLVGRLLYDTGVIEDK----------DLGEGEDKFRVIMDTLEEERERGVTIDLAHTKFETDNYEFTIVDCPGHRDFVKNMITGASQADAAILVVAADDGVMP-------QTKEHAFLAKTLGIDQLIVAINKMDLV--DYDENRYEEVKQEVAELLKTIGYNVDEIPFIPISAFEGDNVVEKSD--NTPWYDGPT 196          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.370e-41
Identity = 93/217 (42.86%), Postives = 127/217 (58.53%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPIS---GSRVTHD*EVYHLDWYRGPT 725
            M KEK H+N+  IGHVD GKST  GHL+ + G I ++ +   E           K+ +V+D+L  ERERG+TID+A  KFET KY  T++D PGHRDF+KNMITG SQAD AVL++    G          QT+EH  L+ TLG+ Q+I   NKMD     Y + +++ +  EV++ +K VGY P      P+S   G  +T   E  +  WY+G T
Sbjct:    1 MAKEKEHMNLAFIGHVDHGKSTLVGHLLLQAGAIAEQQLAEGED----------KFRFVMDRLSEERERGVTIDLAHAKFETDKYEFTIVDCPGHRDFVKNMITGASQADAAVLVVAVDDGVMP-------QTKEHVFLSRTLGINQLIVAINKMDLV--NYDEEKFNALKDEVAALIKTVGYKPSDVEFIPLSAFEGDNITSKSE--NTPWYKGKT 196          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_METST (Elongation factor 1-alpha OS=Methanosphaera stadtmanae (strain DSM 3091) GN=tuf PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.087e-40
Identity = 93/217 (42.86%), Postives = 130/217 (59.91%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPIS---GSRVTHD*EVYHLDWYRGPT 725
            M KEKTH+N+  IGHVD GKST  GHL+   G I ++ ++  E           K+ +V+DKL  ERERG+TID+A  KFET KY  TV+D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMD     YS+ +++E+ +E+ + +  VG+ P      P+S   G  ++   +  +  WY+G T
Sbjct:    1 MAKEKTHMNLAFIGHVDHGKSTLVGHLLLLEGAIAEQQLDEGED----------KFRFVMDKLGEERERGVTIDLAHAKFETQKYEYTVVDCPGHRDFVKNMITGASQADAAVLVVAANDGIMP-------QTKEHIFLSRTLGINQLIIAINKMDVV--DYSEDKFNELKEELGALISTVGFKPSDVPFIPVSAFEGDNISE--KSSNTPWYKGNT 196          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.421e-40
Identity = 92/215 (42.79%), Postives = 126/215 (58.60%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPISGSRVTHD*EVY-HLDWYRGPT 725
            M K K HIN+  IGHVD GKST  GHL+ K G I ++ ++  E           K+ +V+DKL  ERERG+TID+A  KF T KY  TV+D PGHRDF+KNMITG SQAD  VL++ +  G          QT+EH  L+ TLG+ Q+I   NK+D     Y +A+++E+  EVS+ +K VG+ P      P+S     +  +   +  WY+G T
Sbjct:    1 MAKTKEHINLAFIGHVDHGKSTLVGHLLLKAGAIAEQQLDDGEN----------KFRFVMDKLGEERERGVTIDLAHQKFSTKKYDYTVVDCPGHRDFVKNMITGASQADAGVLVVAADDGVMP-------QTKEHVFLSKTLGINQLIVAINKIDLV--DYDEAKFNELKDEVSALIKTVGFNPADVPFIPVSAFEGDNIKDASPNTSWYKGDT 196          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_ENCCU (Elongation factor 1-alpha OS=Encephalitozoon cuniculi GN=TEF1 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.787e-39
Identity = 86/211 (40.76%), Postives = 129/211 (61.14%), Query Frame = 3
Query:   96 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPIS---GSRVTHD*EVYHLDWYRG 719
            K  +N   IGHVDSGKSTT G L Y+LG +DKR +E++EKEAA  NK +F  A++ DK  AER+RGITI   L    T K+   ++D PGH+DF+KNM+TG SQAD AV+I+ ++  GFE+ +   G  + H +++  LG +++I C NKMD         +++E+  E+   +K+  +  +     PIS   G  +T   E +  +W++G
Sbjct:   44 KPRLNACFIGHVDSGKSTTVGMLSYQLGAVDKREMEKYEKEAALNNKETFYLAYLTDKTDAERKRGITITTTLVNLPTEKFNINILDCPGHKDFVKNMVTGASQADVAVVIVPAS--GFESCVGVGGMLKTHIMISGILGCEKLIVCVNKMDEIPENKRMEKFNEVSAEMLRIVKR-SHKDKNPIIIPISAFKGINLTKKGEKF--EWFKG 249          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.838e-27
Identity = 66/110 (60.00%), Postives = 78/110 (70.91%), Query Frame = 3
Query:  396 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP-KYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPISGSRVTHD*E-VYHLDWYRG 719
            GTSQAD A+L++ +  GGFE   SK+GQTREHALLAFTLGVKQMI   NKMDATTP KYS+ R++EI  EVS YLK VGY P K    PISG    +  E   ++ WY+G
Sbjct:    1 GTSQADVALLVVPADQGGFEGAFSKEGQTREHALLAFTLGVKQMIVGINKMDATTPDKYSETRFNEIQAEVSRYLKTVGYNPEKVPFVPISGFMGDNMVERSSNMPWYKG 110          
The following BLAST results are available for this feature:
BLAST of FC868498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ERF3_DEBHA6.806e-4339.44Eukaryotic peptide chain release factor GTP-bindin... [more]
EF1A_HALSA1.161e-4244.39Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALS31.161e-4244.39Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALMA1.516e-4242.92Elongation factor 1-alpha OS=Haloarcula marismortu... [more]
EF1A_METKA2.189e-4143.78Elongation factor 1-alpha OS=Methanopyrus kandleri... [more]
EF1A_METTH6.370e-4142.86Elongation factor 1-alpha OS=Methanobacterium ther... [more]
EF1A_METST1.087e-4042.86Elongation factor 1-alpha OS=Methanosphaera stadtm... [more]
EF1A_METS32.421e-4042.79Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_ENCCU7.787e-3940.76Elongation factor 1-alpha OS=Encephalitozoon cunic... [more]
EF1A_EIMBO6.838e-2760.00Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001B02EF AbioticL1 Citrus clementina cDNA clone C31001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868498 ID=FC868498; Name=FC868498; organism=Citrus clementina; type=EST; length=728bp
GACTCTTTGCCCTCCCTCTTTTCTTGCTTGCTCTGCGGCTAGGTTTCAAT
TGTCTCTTCGAAGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGAC
TCACATCAACATTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCA
CCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATC
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCAT
TCGTGCCCNATCTCTGGTTCGAGGGTGACACATGATTGAGAGGTCTACCA
CCTTGACTGGTACAGGGGTCCAACCTGC
back to top