FC868498

Overview
NameFC868498
Unique NameFC868498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_THEAB (Elongation factor Tu OS=Thermosipho africanus (strain TCF52B) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 58/154 (37.66%), Postives = 81/154 (52.60%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H+N+  IGH+D GK+T T  +   L    +     +E+               +DK   E+ERGITI+I+  ++ET   +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D
Sbjct:    8 RSKPHLNVGTIGHIDHGKTTLTAAITKYLSFFGRADYTPYEQ---------------IDKAPEEKERGITINISHIEYETETRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVNVPAMIVFINKTD 139          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_RHOSR (Elongation factor Tu OS=Rhodococcus sp. (strain RHA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 64/181 (35.36%), Postives = 97/181 (53.59%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFE--KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV 626
            + K H+NI  IGHVD GK+T T         I K + + +    EA+  ++        +DK   E+ RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           DEI++ V   ++++
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDAYPDLNEASAFDE--------IDKAPEEKARGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVDD-------DEIIELVEMEVREL 159          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_RHOOB (Elongation factor Tu OS=Rhodococcus opacus (strain B4) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 64/181 (35.36%), Postives = 97/181 (53.59%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFE--KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV 626
            + K H+NI  IGHVD GK+T T         I K + + +    EA+  ++        +DK   E+ RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           DEI++ V   ++++
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDAYPDLNEASAFDE--------IDKAPEEKARGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVDD-------DEIIELVEMEVREL 159          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_PHYMT (Elongation factor Tu OS=Phytoplasma mali (strain AT) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 58/154 (37.66%), Postives = 83/154 (53.90%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            ++K H+N+  IGHVD GK+T T  +   L            K  AE   +S+     +DK K E+ERGITI+     +ET K +   +D PGH D++KNMITG +Q D  +L++ +  G          QTREH LLA  +G+ ++I   NK D
Sbjct:    8 RDKVHVNVGTIGHVDHGKTTLTAAITKILS----------TKGLAE--NKSYDQ---IDKTKEEKERGITINTTHVSYETEKRHYAHVDCPGHADYVKNMITGAAQMDAGILVVSAYHGVMP-------QTREHVLLAGQVGISKLIVFLNKCD 139          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_NITSB (Elongation factor Tu OS=Nitratiruptor sp. (strain SB155-2) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 62/154 (40.26%), Postives = 82/154 (53.25%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            K K H+NI  IGHVD GK+T T  +   L           EK  AE  KR +     +D    ERERGITI  +  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 KTKPHVNIGTIGHVDHGKTTLTAAITAVLA----------EKGYAE--KRDYDQ---IDNAPEERERGITIATSHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKED 139          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_LACGA (Elongation factor Tu OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=tuf PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 59/154 (38.31%), Postives = 82/154 (53.25%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H+NI  IGHVD GK+T T  +   L        E + +               +D    E+ERGITI+ A  ++ET   +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GVK ++   NK+D
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAEDGLAQAEDYSQ---------------IDAAPEEKERGITINTAHVEYETKNRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVKYIVVFLNKVD 140          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_KINRD (Elongation factor Tu OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 59/154 (38.31%), Postives = 86/154 (55.84%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H+NI  IGH+D GK+T T         I + + ++F     E+NK S      +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH +LA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITRVLHDKFP----ELNKASAFDQ--IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVILARQVGVPYIVVALNKAD 141          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_EUBR3 (Elongation factor Tu OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 67/191 (35.08%), Postives = 94/191 (49.21%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPI 662
            + K H NI  IGHVD GK+T T  +   L     RV      + A            +DK   ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LL+  +GV  +I   NK D           + +  EV+  L++ G+     + CPI
Sbjct:    8 RTKPHCNIGTIGHVDHGKTTLTAAITAVLAA---RVAGNTATDFAN-----------IDKAPEERERGITISTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGVM-------AQTKEHILLSRQVGVPYIIVFLNKCDMVD---DPELIELVEMEVTEQLEEYGF-----NDCPI 169          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_DESRM (Elongation factor Tu OS=Desulfotomaculum reducens (strain MI-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 58/172 (33.72%), Postives = 87/172 (50.58%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEV 605
            + K H+NI  IGHVD GK+T T  +   L       ++R+++               +D    ERERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK D    +      D  V+E+
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITVVLSTSGGASVKRYDE---------------IDNAPEERERGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLSRQVGVPYIVVFLNKSDMVDDEELLELVDMEVREL 157          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_CHLAB (Elongation factor Tu OS=Chlamydophila abortus GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 65/191 (34.03%), Postives = 98/191 (51.31%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPI 662
            + K HINI  IGHVD GK+T T  +   L              +AE       Y+ + D    E+ RGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D  + + ++   D +  E+S  L++ GY       CPI
Sbjct:    8 RTKPHINIGTIGHVDHGKTTLTAAITRAL--------------SAEGLANFCDYSSI-DNTPEEKARGITINASHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVFLNKIDMISQEDAEL-VDLVEMELSELLEEKGY-----KGCPI 170          
The following BLAST results are available for this feature:
BLAST of FC868498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_THEAB8.096e-2037.66Elongation factor Tu OS=Thermosipho africanus (str... [more]
EFTU_RHOSR8.096e-2035.36Elongation factor Tu OS=Rhodococcus sp. (strain RH... [more]
EFTU_RHOOB8.096e-2035.36Elongation factor Tu OS=Rhodococcus opacus (strain... [more]
EFTU_PHYMT8.096e-2037.66Elongation factor Tu OS=Phytoplasma mali (strain A... [more]
EFTU_NITSB8.096e-2040.26Elongation factor Tu OS=Nitratiruptor sp. (strain ... [more]
EFTU_LACGA8.096e-2038.31Elongation factor Tu OS=Lactobacillus gasseri (str... [more]
EFTU_KINRD8.096e-2038.31Elongation factor Tu OS=Kineococcus radiotolerans ... [more]
EFTU_EUBR38.096e-2035.08Elongation factor Tu OS=Eubacterium rectale (strai... [more]
EFTU_DESRM8.096e-2033.72Elongation factor Tu OS=Desulfotomaculum reducens ... [more]
EFTU_CHLAB8.096e-2034.03Elongation factor Tu OS=Chlamydophila abortus GN=t... [more]

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Properties
Property NameValue
Genbank descriptionC31001B02EF AbioticL1 Citrus clementina cDNA clone C31001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868498 ID=FC868498; Name=FC868498; organism=Citrus clementina; type=EST; length=728bp
GACTCTTTGCCCTCCCTCTTTTCTTGCTTGCTCTGCGGCTAGGTTTCAAT
TGTCTCTTCGAAGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGAC
TCACATCAACATTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCA
CCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATC
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCAT
TCGTGCCCNATCTCTGGTTCGAGGGTGACACATGATTGAGAGGTCTACCA
CCTTGACTGGTACAGGGGTCCAACCTGC
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