FC868503 | Citrus Genome Database

Overview


Name	FC868503
Unique Name	FC868503
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	681

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig13179	contig	Ccv1_Contig13179:32..713.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.044e-61
Identity = 105/166 (63.25%), Postives = 120/166 (72.29%), Query Frame = 2

Query:  116 EVAEQQGGSGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNR 613
            EV  ++G   +   KDY DPPPAP  D  EL  WSF+RA IAEFIA            IGYK +TDP      C  VG+LGIAW+FGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSL+RAL+YM+AQC GAICG G VKAF K  YN++GGGAN +A GYN+
Sbjct:    4 EVISEEGQVHQHG-KDYVDPPPAPFFDMGELKLWSFWRAAIAEFIATLLFLYITVATVIGYKKETDP------CASVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNK 162

HSP 2 Score: 44.2838 bits (103), Expect = 2.044e-61
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 1

Query:  610 QGTGLGAEIIGTFVLVYTVFSATD 681
            +GT  GAE+IGTFVLVYTVFSATD
Sbjct:  162 KGTAFGAELIGTFVLVYTVFSATD 185

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.859e-59
Identity = 102/151 (67.55%), Postives = 111/151 (73.51%), Query Frame = 2

Query:  158 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYN 610
            KDY DPPPAPL D  EL  WSFYRA+IAEFIA            IGYK Q+    + DQCGGVG LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGL L RKVS+IRA++Y+VAQCLG I G G VK   K  YN  GGGAN +A GY+
Sbjct:   15 KDYTDPPPAPLFDVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQS----SADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGANMVASGYS 161

HSP 2 Score: 46.2098 bits (108), Expect = 1.859e-59
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 1

Query:  613 GTGLGAEIIGTFVLVYTVFSATD 681
            GT LGAEIIGTFVLVYTVFSATD
Sbjct:  163 GTALGAEIIGTFVLVYTVFSATD 185

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.177e-55
Identity = 97/160 (60.62%), Postives = 109/160 (68.12%), Query Frame = 2

Query:  134 GGSGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNR 613
            G S + + KDY +PPPAPL +  EL  WSFYRA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ YM+ QCLGAICG G VK FQ + Y   GGGAN +A GY +
Sbjct:   22 GTSAQSTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRA--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTK 175

HSP 2 Score: 47.3654 bits (111), Expect = 1.177e-55
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 1

Query:  610 QGTGLGAEIIGTFVLVYTVFSATD 681
            +G+GLGAEIIGTFVLVYTVFSATD
Sbjct:  175 KGSGLGAEIIGTFVLVYTVFSATD 198

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 2.000e-55
Identity = 96/170 (56.47%), Postives = 116/170 (68.24%), Query Frame = 2

Query:  107 KDVEVAEQQGGSGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNRA 616
            ++V V   +GG+    A  Y DPPPAPL+D  ELGKWS YRA+IAEF+A            IGYK+Q       D C GVG LG+AW+FG  IF+LVYCT G+SGGHINPAVT GLF GRK+SL+R +LY+VAQCLGAI G G VK   K  Y+  GGGAN ++DGY+ A
Sbjct:    5 EEVAVETVEGGAAAAKAP-YWDPPPAPLLDTSELGKWSLYRALIAEFMATLIFLYVSIATVIGYKNQ---RATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAA 170

HSP 2 Score: 41.2022 bits (95), Expect = 2.000e-55
Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = 1

Query:  622 LGAEIIGTFVLVYTVFSATD 681
            LGAEI+GTF+LVYTVFSATD
Sbjct:  173 LGAEIVGTFILVYTVFSATD 192

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.608e-55
Identity = 99/179 (55.31%), Postives = 115/179 (64.25%), Query Frame = 2

Query:   77 QNKNKREKMGKDVEVAEQQGGSGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNR 613
            + K +  ++G +     Q  G+   S KDY +PPPAPL +  EL  WSF+RA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ Y+V QCLGAICG G VK FQ   Y   GGGAN +A GY +
Sbjct:    2 EGKEEDVRVGANKFPERQPIGTSAQSDKDYKEPPPAPLFEPGELASWSFWRAGIAEFIATFLFLYITVLTVMGVKRS--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIAHGYTK 174

HSP 2 Score: 47.3654 bits (111), Expect = 2.608e-55
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 1

Query:  610 QGTGLGAEIIGTFVLVYTVFSATD 681
            +G+GLGAEIIGTFVLVYTVFSATD
Sbjct:  174 KGSGLGAEIIGTFVLVYTVFSATD 197

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.432e-55
Identity = 99/179 (55.31%), Postives = 114/179 (63.69%), Query Frame = 2

Query:   77 QNKNKREKMGKDVEVAEQQGGSGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNR 613
            + K +  ++G +     Q  G+   S KDY +PPPAP  +  EL  WSF+RA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL Y+V QCLGAICG G VK FQ   Y   GGGAN +A GY +
Sbjct:    2 EGKEEDVRVGANKFPERQPIGTSAQSDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRS--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTK 174

HSP 2 Score: 47.3654 bits (111), Expect = 4.432e-55
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 1

Query:  610 QGTGLGAEIIGTFVLVYTVFSATD 681
            +G+GLGAEIIGTFVLVYTVFSATD
Sbjct:  174 KGSGLGAEIIGTFVLVYTVFSATD 197

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.432e-55
Identity = 99/179 (55.31%), Postives = 114/179 (63.69%), Query Frame = 2

Query:   77 QNKNKREKMGKDVEVAEQQGGSGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNR 613
            + K +  ++G +     Q  G+   S KDY +PPPAP  +  EL  WSF+RA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL Y+V QCLGAICG G VK FQ   Y   GGGAN +A GY +
Sbjct:    2 EGKEEDVRVGANKFPERQPIGTSAQSDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRS--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTK 174

HSP 2 Score: 47.3654 bits (111), Expect = 4.432e-55
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 1

Query:  610 QGTGLGAEIIGTFVLVYTVFSATD 681
            +G+GLGAEIIGTFVLVYTVFSATD
Sbjct:  174 KGSGLGAEIIGTFVLVYTVFSATD 197

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.532e-55
Identity = 98/179 (54.75%), Postives = 115/179 (64.25%), Query Frame = 2

Query:   77 QNKNKREKMGKDVEVAEQQGGSGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNR 613
            + K +  ++G +     Q  G+   + KDY +PPPAP  +  EL  WSFYRA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ Y+V QCLGAICG G VK FQ + Y   GGGAN +A GY +
Sbjct:    2 EGKEEDVRVGANKFPERQPIGTSAQTDKDYKEPPPAPFFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRA--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHGYTK 174

HSP 2 Score: 47.3654 bits (111), Expect = 7.532e-55
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 1

Query:  610 QGTGLGAEIIGTFVLVYTVFSATD 681
            +G+GLGAEIIGTFVLVYTVFSATD
Sbjct:  174 KGSGLGAEIIGTFVLVYTVFSATD 197

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.280e-54
Identity = 96/160 (60.00%), Postives = 107/160 (66.88%), Query Frame = 2

Query:  134 GGSGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNR 613
            G + +  +KDY +PPPAP  +  EL  WSFYRA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL Y+V QCLGAICG G VK FQ   Y   GGGAN +A GY +
Sbjct:   22 GTAAQTESKDYKEPPPAPFFEPGELKSWSFYRAGIAEFIATFLFLYVTVLTVMGVKRA--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQPGLYQTNGGGANVVAHGYTK 175

HSP 2 Score: 46.9802 bits (110), Expect = 1.280e-54
Identity = 21/24 (87.50%), Postives = 24/24 (100.00%), Query Frame = 1

Query:  610 QGTGLGAEIIGTFVLVYTVFSATD 681
            +G+GLGAEI+GTFVLVYTVFSATD
Sbjct:  175 KGSGLGAEIVGTFVLVYTVFSATD 198

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.669e-54
Identity = 97/179 (54.19%), Postives = 113/179 (63.13%), Query Frame = 2

Query:   77 QNKNKREKMGKDVEVAEQQGGSGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNR 613
            +NK +  K+G +     Q  G+   + KDY +PPPAPL +  EL  WSFYRA IAEF+A            +G K       +   C  VGI G+AWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ YMV QCLGAICG G VK F    Y R GGGAN +  GY +
Sbjct:    3 ENKEEDVKLGANKFRETQPLGTAAQTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFMATFLFLYITILTVMGLKR------SDSLCSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTK 175

HSP 2 Score: 46.595 bits (109), Expect = 1.669e-54
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 1

Query:  610 QGTGLGAEIIGTFVLVYTVFSATD 681
            +G GLGAEIIGTFVLVYTVFSATD
Sbjct:  175 KGDGLGAEIIGTFVLVYTVFSATD 198

The following BLAST results are available for this feature:

BLAST of FC868503 vs. ExPASy Swiss-Prot

BLAST of FC868503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91


Match Name	E-value	Identity	Description
PIP1_ATRCA	2.044e-61	63.25	Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1	[more]
PIP26_ORYSJ	1.859e-59	67.55	Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j...	[more]
PIP14_ARATH	1.177e-55	60.63	Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ...	[more]
PIP27_ORYSJ	2.000e-55	56.47	Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j...	[more]
PIP12_ARATH	2.608e-55	55.31	Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2...	[more]
PIP11_VICFA	4.432e-55	55.31	Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1	[more]
PIP11_ARATH	4.432e-55	55.31	Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1...	[more]
PIP13_ARATH	7.532e-55	54.75	Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3...	[more]
PIP15_ARATH	1.280e-54	60.00	Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ...	[more]
PIP1_SOLLC	1.669e-54	54.19	Probable aquaporin PIP-type pTOM75 OS=Solanum lyco...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31001B11EF AbioticL1 Citrus clementina cDNA clone C31001B11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC868503 ID=FC868503; Name=FC868503; organism=Citrus clementina; type=EST; length=681bp
CTTCCCCGGGGAGGATCATTAAACTCTGTAGCTCCACAACAGTCGTAGCT
CTTGTTTCTCCCTCTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAA
ATGGGGAAGGATGTTGAAGTTGCTGAGCAGCAAGGCGGCAGCGGCGAGTT
CTCAGCCAAGGACTACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCG
AGGAGCTGGGCAAGTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATC
GCTACGCTTTTGTTTCTTTATGTTACCGTCTTGACTGTGATTGGATACAA
GAGCCAGACTGATCCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCA
TTCTTGGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTAC
TGCACAGCCGGTATTTCTGGTGGACATATCAACCCGGCTGTGACATTCGG
ACTGTTCTTGGGGCGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGG
TAGCACAGTGCTTGGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTC
CAAAAATCATACTACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGA
TGGATACAACAGGGCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGT
TCTTGTCTACACTGTTTTCTCTGCCACTGAT