FC868503

Overview
NameFC868503
Unique NameFC868503
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13179 contig Ccv1_Contig13179:32..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.536e-12
Identity = 40/114 (35.09%), Postives = 59/114 (51.75%), Query Frame = 2
Query:  200 EELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV 541
            +E+   +F++AV AEF+A            + + S               IL I+ AFG  I  L      +SGGHINPA+T  L +G ++SL+RA+ Y+ AQ +GAI G G +
Sbjct:    3 KEVCSLAFFKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGIL 105          

HSP 2 Score: 22.7126 bits (47), Expect = 2.536e-12
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  613 GTGLGAEIIGTFVLVYTVFSATD 681
            G  +  E+I TF L   +FS+TD
Sbjct:  129 GKAMVVELILTFQLALCIFSSTD 151          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  188 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV 541
            ++ F+ +   +F++AV AEF+A            I +  + +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +
Sbjct:   23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGKENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL 133          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.293e-12
Identity = 40/114 (35.09%), Postives = 59/114 (51.75%), Query Frame = 2
Query:  200 EELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV 541
            +E+   +F++AV AEF+A            + + S               IL I+ AFG  I  L      +SGGHINPA+T  L +G ++SL+RA+ Y+ AQ +GAI G G +
Sbjct:    3 KEVCSVAFFKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGIL 105          

HSP 2 Score: 22.3274 bits (46), Expect = 3.293e-12
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  613 GTGLGAEIIGTFVLVYTVFSATD 681
            G  +  E+I TF L   +FS+TD
Sbjct:  129 GKAVVVELILTFQLALCIFSSTD 151          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 3.300e-12
Identity = 39/102 (38.24%), Postives = 52/102 (50.98%), Query Frame = 2
Query:  227 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC 532
            +A +AEFIA            I Y   T            G++ IA A    +F+ V   A ISGGH+NPAVTFGL +G  ++++  +LY VAQ LGA   C
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYSQLTKGGA----LDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVAC 116          

HSP 2 Score: 24.2534 bits (51), Expect = 3.300e-12
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  604 IQQGTGLGAEIIGTFVLVYTVFS 672
            I +  G+  EI+ TF LVYTV++
Sbjct:  136 ISEIEGVVMEIVITFALVYTVYA 158          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 41/118 (34.75%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  188 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV 541
            ++ F+ +   +F++AV AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +
Sbjct:   23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL 133          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 41/118 (34.75%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  188 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV 541
            ++ F+ +   +F++AV AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +
Sbjct:   26 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL 136          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.285e-12
Identity = 37/102 (36.27%), Postives = 52/102 (50.98%), Query Frame = 2
Query:  227 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC 532
            +A +AEFI+            + +   T     T      G++  A A    +F+ V   A ISGGH+NPAVTFG F+G  ++L R LLY +AQ LG+   C
Sbjct:   21 KAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTP----AGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVAC 118          

HSP 2 Score: 21.9422 bits (45), Expect = 4.285e-12
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  631 EIIGTFVLVYTVFS 672
            EI+ TF LVYTV++
Sbjct:  147 EIVMTFGLVYTVYA 160          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.285e-12
Identity = 40/111 (36.04%), Postives = 57/111 (51.35%), Query Frame = 2
Query:  227 RAVIAEFIAXXXXXXXXXXXXIGYKSQT-----DPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 544
            +A +AEFI+            I Y   T     DP          G++ +A   G  +F+ V   A ISGGH+NPAVTFGL LG +++++  + Y +AQ LGAI G   V+
Sbjct:   20 KAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDP---------AGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQ 121          

HSP 2 Score: 23.483 bits (49), Expect = 4.285e-12
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  619 GLGAEIIGTFVLVYTVFS 672
            G+  EII TF LVYTV++
Sbjct:  141 GVVMEIIVTFGLVYTVYA 158          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.285e-12
Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 2
Query:  227 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC---GFV 541
            +A +AEFIA            I Y   T    N       G++ IA A    +F+ V   A ISGGH+NPAVTFGL +G  ++++  + Y VAQ LGA   C   GFV
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYGQLT----NGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGVFYWVAQLLGATVACLLLGFV 122          

HSP 2 Score: 23.483 bits (49), Expect = 4.285e-12
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  604 IQQGTGLGAEIIGTFVLVYTVFS 672
            I +  G+  E++ TF LVYTV++
Sbjct:  136 ISELEGVVFEVVITFALVYTVYA 158          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.285e-12
Identity = 37/105 (35.24%), Postives = 52/105 (49.52%), Query Frame = 2
Query:  218 SFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC 532
            S  +A ++EFIA            + +   T            G++ IA A    +F+ V   A ISGGH+NPAVT GL +G  ++LI    Y +AQCLG+I  C
Sbjct:   16 SSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGA----LDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVAC 116          

HSP 2 Score: 24.2534 bits (51), Expect = 4.285e-12
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  619 GLGAEIIGTFVLVYTVFS 672
            G+  EI+ TF LVYTV++
Sbjct:  142 GVVMEIVVTFALVYTVYA 159          
The following BLAST results are available for this feature:
BLAST of FC868503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
AQP5_RAT2.536e-1235.09Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
AQP4_DIPME3.229e-1234.75Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP5_MOUSE3.293e-1235.09Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
TIP23_MAIZE3.300e-1238.24Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
AQP4_RAT4.217e-1234.75Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL4.217e-1234.75Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
TIP11_ORYSJ4.285e-1236.27Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP22_ORYSJ4.285e-1236.04Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP21_MAIZE4.285e-1238.89Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
TIP23_ARATH4.285e-1235.24Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]

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Properties
Property NameValue
Genbank descriptionC31001B11EF AbioticL1 Citrus clementina cDNA clone C31001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868503 ID=FC868503; Name=FC868503; organism=Citrus clementina; type=EST; length=681bp
CTTCCCCGGGGAGGATCATTAAACTCTGTAGCTCCACAACAGTCGTAGCT
CTTGTTTCTCCCTCTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAA
ATGGGGAAGGATGTTGAAGTTGCTGAGCAGCAAGGCGGCAGCGGCGAGTT
CTCAGCCAAGGACTACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCG
AGGAGCTGGGCAAGTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATC
GCTACGCTTTTGTTTCTTTATGTTACCGTCTTGACTGTGATTGGATACAA
GAGCCAGACTGATCCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCA
TTCTTGGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTAC
TGCACAGCCGGTATTTCTGGTGGACATATCAACCCGGCTGTGACATTCGG
ACTGTTCTTGGGGCGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGG
TAGCACAGTGCTTGGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTC
CAAAAATCATACTACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGA
TGGATACAACAGGGCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGT
TCTTGTCTACACTGTTTTCTCTGCCACTGAT
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