FC868503

Overview
NameFC868503
Unique NameFC868503
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13179 contig Ccv1_Contig13179:32..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 44/109 (40.37%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  203 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICG 529
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA+ YMVAQ LGA+ G
Sbjct:    3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAG 100          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.381e-12
Identity = 38/102 (37.25%), Postives = 51/102 (50.00%), Query Frame = 2
Query:  227 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC 532
            +A  AEFI+            + +   T     T      G++  A A    +F+ V   A ISGGH+NPAVTFG F+G  ++L R LLY VAQ LG+   C
Sbjct:   21 KAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTP----AGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVAC 118          

HSP 2 Score: 21.9422 bits (45), Expect = 9.381e-12
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  631 EIIGTFVLVYTVFS 672
            EI+ TF LVYTV++
Sbjct:  147 EIVMTFGLVYTVYA 160          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 2
Query:  188 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV 541
            ++ F+ +   +F++AV AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +
Sbjct:   23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL 133          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.215e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  326 TDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC 532
            T+  GG+ ++ +A AF   +F  V     +SGGH+NPAVTFG  +G +V+ IRA+ Y +AQ LGAI  C
Sbjct:   60 TNTPGGLILVALAHAFA--LFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILAC 126          

HSP 2 Score: 23.483 bits (49), Expect = 1.215e-11
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  619 GLGAEIIGTFVLVYTVFS 672
            GL  EII TF LVY V+S
Sbjct:  152 GLVLEIILTFGLVYVVYS 169          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.215e-11
Identity = 36/105 (34.29%), Postives = 55/105 (52.38%), Query Frame = 2
Query:  227 RAVIAEFIAXXXXXXXXXXXXIGYKS---QTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC 532
            RA +AEF++            +        T  +  T+  GG+ ++ +A A    +F  V     +SGGH+NPAVTF   +G ++S+IRA+ Y VAQ +GAI  C
Sbjct:   24 RATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALA--LFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILAC 126          

HSP 2 Score: 24.2534 bits (51), Expect = 1.215e-11
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  619 GLGAEIIGTFVLVYTVFS 672
            GL  EII TF LVY V+S
Sbjct:  152 GLLMEIILTFALVYVVYS 169          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  203 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICG 529
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA+ Y+VAQ LGA+ G
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAG 100          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  203 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICG 529
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA+ YM AQ LGA+ G
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAG 100          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 43/109 (39.45%), Postives = 57/109 (52.29%), Query Frame = 2
Query:  203 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICG 529
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA  YM AQ LGA+ G
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWTP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAG 100          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.049e-11
Identity = 37/114 (32.46%), Postives = 58/114 (50.88%), Query Frame = 2
Query:  200 EELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV 541
            +E+   +F +AV AEF+A            + + S               +L I+ AFG  I  +      +SGGH+NPA+T  L +G ++SL+RA+ Y+VAQ +GAI G   +
Sbjct:    3 KEVCSAAFLKAVFAEFLATLIFVFFGLGSALKWPSAMP-----------SVLQISLAFGLAIGTMAQALGPVSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAIL 105          

HSP 2 Score: 23.8682 bits (50), Expect = 2.049e-11
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  613 GTGLGAEIIGTFVLVYTVFSATD 681
            G  + AE+I TF L   VFS+TD
Sbjct:  129 GQAVVAEMILTFQLALCVFSSTD 151          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 2.053e-11
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  227 RAVIAEFIAXXXXXXXXXXXXIGY-KSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC 532
            +A ++EFIA            + + K  +D  L+       G++ +A A    +F+ V   A ISGGH+NPAVT GL +G  +++I    Y +AQCLG+I  C
Sbjct:   19 KAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDP-----AGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVAC 116          

HSP 2 Score: 24.2534 bits (51), Expect = 2.053e-11
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  619 GLGAEIIGTFVLVYTVFS 672
            G+  EI+ TF LVYTV++
Sbjct:  142 GVVMEIVVTFALVYTVYA 159          
The following BLAST results are available for this feature:
BLAST of FC868503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
MIP_BOVIN5.508e-1240.37Lens fiber major intrinsic protein OS=Bos taurus G... [more]
TIP11_MAIZE9.381e-1237.25Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
AQP4_HUMAN9.395e-1234.75Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
TIP31_ARATH1.215e-1146.38Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP32_ARATH1.215e-1134.29Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
MIP_SHEEP1.227e-1139.45Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_RABIT1.227e-1139.45Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
MIP_CANFA1.603e-1139.45Lens fiber major intrinsic protein OS=Canis famili... [more]
AQP5_SHEEP2.049e-1132.46Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
TIP22_ARATH2.053e-1134.95Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC31001B11EF AbioticL1 Citrus clementina cDNA clone C31001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868503 ID=FC868503; Name=FC868503; organism=Citrus clementina; type=EST; length=681bp
CTTCCCCGGGGAGGATCATTAAACTCTGTAGCTCCACAACAGTCGTAGCT
CTTGTTTCTCCCTCTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAA
ATGGGGAAGGATGTTGAAGTTGCTGAGCAGCAAGGCGGCAGCGGCGAGTT
CTCAGCCAAGGACTACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCG
AGGAGCTGGGCAAGTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATC
GCTACGCTTTTGTTTCTTTATGTTACCGTCTTGACTGTGATTGGATACAA
GAGCCAGACTGATCCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCA
TTCTTGGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTAC
TGCACAGCCGGTATTTCTGGTGGACATATCAACCCGGCTGTGACATTCGG
ACTGTTCTTGGGGCGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGG
TAGCACAGTGCTTGGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTC
CAAAAATCATACTACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGA
TGGATACAACAGGGCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGT
TCTTGTCTACACTGTTTTCTCTGCCACTGAT
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