FC868503

Overview
NameFC868503
Unique NameFC868503
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 9.826e-11
Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 2 
Query:  227 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAI 523
            +A +AEFI+            I Y   T+    T      G++  + A    +F+ V   A ISGGH+NPAV FG F+G  ++L+R ++Y++AQ LG+I
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATP----AGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSI 114

HSP 2 Score: 24.6386 bits (52), Expect = 9.826e-11
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 1 
Query:  604 IQQGTGLGA----EIIGTFVLVYTVFS 672
            + +G G+G     EI+ TF LVYTV++
Sbjct:  133 LSEGVGVGPALVLEIVMTFGLVYTVYA 159
The following BLAST results are available for this feature:
BLAST of FC868503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
TIP1_MEDSA9.826e-1135.35Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001B11EF AbioticL1 Citrus clementina cDNA clone C31001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868503 ID=FC868503; Name=FC868503; organism=Citrus clementina; type=EST; length=681bp
CTTCCCCGGGGAGGATCATTAAACTCTGTAGCTCCACAACAGTCGTAGCT
CTTGTTTCTCCCTCTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAA
ATGGGGAAGGATGTTGAAGTTGCTGAGCAGCAAGGCGGCAGCGGCGAGTT
CTCAGCCAAGGACTACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCG
AGGAGCTGGGCAAGTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATC
GCTACGCTTTTGTTTCTTTATGTTACCGTCTTGACTGTGATTGGATACAA
GAGCCAGACTGATCCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCA
TTCTTGGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTAC
TGCACAGCCGGTATTTCTGGTGGACATATCAACCCGGCTGTGACATTCGG
ACTGTTCTTGGGGCGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGG
TAGCACAGTGCTTGGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTC
CAAAAATCATACTACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGA
TGGATACAACAGGGCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGT
TCTTGTCTACACTGTTTTCTCTGCCACTGAT
back to top