Overview
Name FC868503
Unique Name FC868503
Type EST
Organism Citrus clementina (Clementine)
Sequence length 681
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match:
TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)
HSP 1 Score: 60.8474 bits (146), Expect = 9.826e-11
Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 2
Query: 227 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAI 523
+A +AEFI+ I Y T+ T G++ + A +F+ V A ISGGH+NPAV FG F+G ++L+R ++Y++AQ LG+I
Sbjct: 21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATP----AGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSI 114 HSP 2 Score: 24.6386 bits (52), Expect = 9.826e-11
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 1
Query: 604 IQQGTGLGA----EIIGTFVLVYTVFS 672
+ +G G+G EI+ TF LVYTV++
Sbjct: 133 LSEGVGVGPALVLEIVMTFGLVYTVYA 159
The following BLAST results are available for this feature:
BLAST of FC868503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (
BLAST: Citrus ESTs to SwissProt )
Total hits: 91
100 200 300 400 500 600 Expect = 9.83e-11 / Id = 35.35 Expect = 9.83e-11 / Id = 35.35 Sequence TIP1_MEDSA
Match Name E-value Identity Description
TIP1_MEDSA 9.826e-11 35.35 Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
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Properties
Property Name Value
Genbank description C31001B11EF AbioticL1 Citrus clementina cDNA clone C31001B11, mRNA sequence.
Sequences
The
following sequences are available for this feature:
EST sequence
>FC868503 ID=FC868503; Name=FC868503; organism=Citrus clementina; type=EST; length=681bp CTTCCCCGGGGAGGATCATTAAACTCTGTAGCTCCACAACAGTCGTAGCT CTTGTTTCTCCCTCTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAA ATGGGGAAGGATGTTGAAGTTGCTGAGCAGCAAGGCGGCAGCGGCGAGTT CTCAGCCAAGGACTACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCG AGGAGCTGGGCAAGTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATC GCTACGCTTTTGTTTCTTTATGTTACCGTCTTGACTGTGATTGGATACAA GAGCCAGACTGATCCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCA TTCTTGGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTAC TGCACAGCCGGTATTTCTGGTGGACATATCAACCCGGCTGTGACATTCGG ACTGTTCTTGGGGCGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGG TAGCACAGTGCTTGGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTC CAAAAATCATACTACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGA TGGATACAACAGGGCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGT TCTTGTCTACACTGTTTTCTCTGCCACTGAT back to top