FC868507

Overview
NameFC868507
Unique NameFC868507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC868507 vs. ExPASy Swiss-Prot
Match: HPPA1_RHILT (Pyrophosphate-energized proton pump 1 (Fragment) OS=Rhizobium leguminosarum bv. trifolii GN=hppA1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.395e-18
Identity = 47/104 (45.19%), Postives = 64/104 (61.54%), Query Frame = 2 
Query:   44 GITTVDVLTPKVFIGLIVEAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG 355
            G  +  +  P V  GL+   ++PY F  + M +VG AA  +VEEVRRQF   PG+M GT KPDY   V + T A+I+EM+ P  L +L PL+V  +FGV  +SG
Sbjct:   35 GEISFSLANPYVVAGLLFGGLIPYLFGGIAMTAVGKAASAIVEEVRRQFREKPGIMAGTEKPDYGRAVDLLTKAAIREMVIPSLLPVLAPLVV--YFGVLLISG 136
The following BLAST results are available for this feature:
BLAST of FC868507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
HPPA1_RHILT9.395e-1845.19Pyrophosphate-energized proton pump 1 (Fragment) O... [more]

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Properties
Property NameValue
Genbank descriptionC31001C04EF AbioticL1 Citrus clementina cDNA clone C31001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868507 ID=FC868507; Name=FC868507; organism=Citrus clementina; type=EST; length=704bp
GTTGGTGTCTTTGGCTCTATTTGCTGCTTTTGTGAGCCGTGCTGGAATTA
CAACTGTTGATGTTTTGACCCCCAAGGTCTTCATTGGTCTGATTGTTGAG
GCCATGCTTCCTTACTGGTTCTCAGCCATGACAATGAAGAGTGTGGGAAG
TGCAGCTTTGAAGATGGTTGAGGAAGTCCGCAGACAGTTCAACACCATTC
CAGGTCTCATGGAGGGCACTACCAAGCCTGATTACGCTACCTGTGTTAAG
ATCTCAACCGATGCATCCATCAAGGAGATGATTCCTCCTGGTGCTCTTGT
CATGCTCACACCCCTCATTGTTGGAATCTTCTTTGGTGTGGAAACCCTTT
CTGGTGTGCTCGCTGGCTCCCTTGTTTCGGGTGTTCAGATAGCAATATCT
GCCTCCAACACTGGCGGTGCATGGGATAATGCCAAGAAATATATTGAGGC
TGGTGCCTCAGAGCATGCAAGGACCCTTGGCCCAAAGGGTTCTGAGCCAC
ACAAGGCAGCTGTGATTGGTGATACCATTGGAGATCCACTGAAGGATACG
TCAGGCCCATCTCTAAACATCCTCATCAAACTCATGGCCGTTGAATCACT
GGTGTTTGCTCCTTTCTTTGCCACCCACGGTGGNCTGCTTTTCAAGATCT
TCTGAAGAAGAGATAATGTGAAATACATTGCGGAAGAAGGTCATTGACTT
TTGC
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