FC868517

Overview
NameFC868517
Unique NameFC868517
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5909 contig Ccv1_Contig5909:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICHE (Citrate synthase (Fragment) OS=Rickettsia helvetica GN=gltA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.572e-25
Identity = 58/139 (41.73%), Postives = 89/139 (64.03%), Query Frame = 3 
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            GK +++P+ +       D   I+    +     YDPG+++TA  +S+I YIDGD+GILR+RGY I++LAE S FLEVAYLL+YG LPS  Q  ++   V+ HS V + +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   11 GKIFKLPILKASI--GEDVINISRVSAEADCFTYDPGFMSTASCQSTITYIDGDKGILRHRGYDIKDLAEKSDFLEVAYLLIYGELPSSEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLSAFYPD 147
[Close]
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICAK (Citrate synthase (Fragment) OS=Rickettsia akari GN=gltA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.572e-25
Identity = 59/139 (42.45%), Postives = 89/139 (64.03%), Query Frame = 3 
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            GK +Q+P+ +       D   I+    +     YDPG+++TA  +S+I YIDGD+GILR+RGY I++LAE S FLEVAYLL+YG LPS  Q  ++   V+ HS V + +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   11 GKIFQLPILKASI--GEDVIDISRVSAEVNCFTYDPGFMSTASCKSTITYIDGDKGILRHRGYNIKDLAEKSDFLEVAYLLIYGELPSIEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAIGSLSAFYPD 147
[Close]
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICFE (Citrate synthase OS=Rickettsia felis GN=gltA PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 58/139 (41.73%), Postives = 90/139 (64.75%), Query Frame = 3 
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            GK +++P+ +       D   I+   ++     YDPG+++TA  +S+I YIDGD+GILR+RGY I++LAE S FLEVAYLL+YG LPS  Q  ++   V+ HS V + +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   18 GKIFKLPILKASI--GEDVIDISRVSSEADCFTYDPGFMSTASCQSTITYIDGDKGILRHRGYDIKDLAEKSDFLEVAYLLIYGELPSIEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLSAFYPD 154
[Close]
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICSL (Citrate synthase (Fragment) OS=Rickettsia slovaca GN=gltA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25
Identity = 58/139 (41.73%), Postives = 89/139 (64.03%), Query Frame = 3 
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            GK +++P+ +       D   I+    +     YDPG+++TA  +S+I YIDGD+GILR+RGY I++LAE S FLEVAYLL+YG LPS  Q  ++   V+ HS V + +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   11 GKIFKLPILKASI--GEDVIDISRVSAEADCFTYDPGFMSTASCQSTITYIDGDKGILRHRGYDIKDLAEKSDFLEVAYLLIYGELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLSAFYPD 147
[Close]
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICSI (Citrate synthase (Fragment) OS=Rickettsia sibirica GN=gltA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25
Identity = 58/139 (41.73%), Postives = 89/139 (64.03%), Query Frame = 3 
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            GK +++P+ +       D   I+    +     YDPG+++TA  +S+I YIDGD+GILR+RGY I++LAE S FLEVAYLL+YG LPS  Q  ++   V+ HS V + +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   11 GKIFKLPILKASI--GEDVIDISRVSAEADCFTYDPGFMSTASCQSTITYIDGDKGILRHRGYDIKDLAEKSDFLEVAYLLIYGELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLSAFYPD 147
[Close]
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICRH (Citrate synthase (Fragment) OS=Rickettsia rhipicephali GN=gltA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25
Identity = 58/139 (41.73%), Postives = 89/139 (64.03%), Query Frame = 3 
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            GK +++P+ +       D   I+    +     YDPG+++TA  +S+I YIDGD+GILR+RGY I++LAE S FLEVAYLL+YG LPS  Q  ++   V+ HS V + +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   11 GKIFKLPILKASI--GEDVIDISRVSAEADCFTYDPGFMSTASCQSTITYIDGDKGILRHRGYDIKDLAEKSDFLEVAYLLIYGELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLSAFYPD 147
[Close]
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICPR (Citrate synthase OS=Rickettsia prowazekii GN=gltA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25
Identity = 58/139 (41.73%), Postives = 89/139 (64.03%), Query Frame = 3 
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            GK +++P+ +    K  D   I+    +     YDPG+++TA  +S+I YIDGD+GIL YRGY I++LAE S FLEVAYL++YG LPS  Q  ++   V+ HS V + +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   18 GKLFKLPILKASIGK--DVIDISRVSAEADYFTYDPGFMSTASCQSTITYIDGDKGILWYRGYDIKDLAEKSDFLEVAYLMIYGELPSSDQYCNFTKKVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLSAFYPD 154
[Close]
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICPA (Citrate synthase (Fragment) OS=Rickettsia parkeri GN=gltA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25
Identity = 58/139 (41.73%), Postives = 89/139 (64.03%), Query Frame = 3 
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            GK +++P+ +       D   I+    +     YDPG+++TA  +S+I YIDGD+GILR+RGY I++LAE S FLEVAYLL+YG LPS  Q  ++   V+ HS V + +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   11 GKIFKLPILKASI--GEDVIDISRVSAEADCFTYDPGFMSTASCQSTITYIDGDKGILRHRGYDIKDLAEKSDFLEVAYLLIYGELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLSAFYPD 147
[Close]
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICMA (Citrate synthase (Fragment) OS=Rickettsia massiliae GN=gltA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25
Identity = 58/139 (41.73%), Postives = 89/139 (64.03%), Query Frame = 3 
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            GK +++P+ +       D   I+    +     YDPG+++TA  +S+I YIDGD+GILR+RGY I++LAE S FLEVAYLL+YG LPS  Q  ++   V+ HS V + +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   11 GKIFKLPILKASI--GEDVIDISRVSAEADCFTYDPGFMSTASCQSTITYIDGDKGILRHRGYDIKDLAEKSDFLEVAYLLIYGELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLSAFYPD 147
[Close]
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICCN (Citrate synthase OS=Rickettsia conorii GN=gltA PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25
Identity = 58/139 (41.73%), Postives = 89/139 (64.03%), Query Frame = 3 
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            GK +++P+ +       D   I+    +     YDPG+++TA  +S+I YIDGD+GILR+RGY I++LAE S FLEVAYLL+YG LPS  Q  ++   V+ HS V + +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   18 GKIFKLPILKASI--GEDVIDISRVSAEADCFTYDPGFMSTASCQSTITYIDGDKGILRHRGYDIKDLAEKSDFLEVAYLLIYGELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLSAFYPD 154
The following BLAST results are available for this feature:
BLAST of FC868517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CISY_RICHE1.572e-2541.73Citrate synthase (Fragment) OS=Rickettsia helvetic... [more]
CISY_RICAK1.572e-2542.45Citrate synthase (Fragment) OS=Rickettsia akari GN... [more]
CISY_RICFE2.054e-2541.73Citrate synthase OS=Rickettsia felis GN=gltA PE=3 ... [more]
CISY_RICSL3.503e-2541.73Citrate synthase (Fragment) OS=Rickettsia slovaca ... [more]
CISY_RICSI3.503e-2541.73Citrate synthase (Fragment) OS=Rickettsia sibirica... [more]
CISY_RICRH3.503e-2541.73Citrate synthase (Fragment) OS=Rickettsia rhipicep... [more]
CISY_RICPR3.503e-2541.73Citrate synthase OS=Rickettsia prowazekii GN=gltA ... [more]
CISY_RICPA3.503e-2541.73Citrate synthase (Fragment) OS=Rickettsia parkeri ... [more]
CISY_RICMA3.503e-2541.73Citrate synthase (Fragment) OS=Rickettsia massilia... [more]
CISY_RICCN3.503e-2541.73Citrate synthase OS=Rickettsia conorii GN=gltA PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001D05EF AbioticL1 Citrus clementina cDNA clone C31001D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868517 ID=FC868517; Name=FC868517; organism=Citrus clementina; type=EST; length=699bp
GAAATTCATTTATTCAATTTGTATTCACTCATTCATCAACCGAATCAATT
GGACTAGAGCTCGTTTTATCTAGTTTTGCTTCAAAAACAATGGCGCCAAG
CGTAGAATCATCGTCGGCCGTTACAGCTCGTGGGCGGTTGGCCGTACTGA
CAGCTCATTTGGCATCAACCGAGTCAAATCAAGGCAGGCTCATCGAGCCA
TGGTGCACCTCTGCTCAGTCCATGGTACCACCTCCGGGAAATCTCAAGGG
CAGCTTGACCGTCGTCGACGAACGAACCGGCAAAAGATACCAGATACCTG
TCTCTCAGGAAGGCACCGTTAAAGCCACCGACTTCAAGAAGATAACAACA
GGAAAGAACGACAAGGGTTTGAAACTGTATGATCCGGGGTACTTGAACAC
GGCGCCTGTGAGATCATCAATTTGTTATATTGATGGAGATGAGGGTATCC
TTAGATACAGAGGCTACCCTATTGAGGAATTGGCAGAGTCCAGTTCTTTC
TTGGAAGTCGCTTATCTTTTGATGTATGGGAATTTGCCTTCCGAAAGTCA
GCTGACAGACTGGGAATTTGCTGTGTCTCAGCATTCTGCCGTGCCACAGG
GAATTTTGGATATTATCCAGGCAATGCCTCATGATGCACACCCTATGGGA
GTGCTTGTCAGTGCTATGAGTGCTCTTTCTATCTTTCATCCTGATGCCA
back to top