FC868517

Overview
NameFC868517
Unique NameFC868517
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5909 contig Ccv1_Contig5909:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICAU (Citrate synthase (Fragment) OS=Rickettsia australis GN=gltA PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25
Identity = 58/139 (41.73%), Postives = 90/139 (64.75%), Query Frame = 3
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            GK +++P+ +       D   I+    +     YDPG+++TA  +S+I YIDGD+GILR+RGY I++LAE S FLEVAYLL+YG LP+  Q  ++   V+ HS V + +  + QA    +HPM ++++A+ +LS F+PD
Sbjct:   11 GKIFKLPILKASI--GEDVIDISRVSAEADCFTYDPGFMSTASCQSTITYIDGDKGILRHRGYNIKDLAEKSDFLEVAYLLIYGELPTIEQYNNFTTQVAHHSLVNERLHYLFQAFCSSSHPMAIMLAAVGSLSAFYPD 147          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICAE (Citrate synthase OS=Rickettsia africae (strain ESF-5) GN=gltA PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25
Identity = 58/139 (41.73%), Postives = 89/139 (64.03%), Query Frame = 3
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            GK +++P+ +       D   I+    +     YDPG+++TA  +S+I YIDGD+GILR+RGY I++LAE S FLEVAYLL+YG LPS  Q  ++   V+ HS V + +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   18 GKIFKLPILKASI--GEDVIDISRVSAEADCFTYDPGFMSTASCQSTITYIDGDKGILRHRGYDIKDLAEKSDFLEVAYLLIYGELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLSAFYPD 154          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_ASTRI (Citrate synthase (Fragment) OS=Astrakhan rickettsia GN=gltA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25
Identity = 58/139 (41.73%), Postives = 89/139 (64.03%), Query Frame = 3
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            GK +++P+ +       D   I+    +     YDPG+++TA  +S+I YIDGD+GILR+RGY I++LAE S FLEVAYLL+YG LPS  Q  ++   V+ HS V + +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   11 GKIFKLPILKASI--GEDVIDISRVSAEADCFTYDPGFMSTASCQSTITYIDGDKGILRHRGYDIKDLAEKSDFLEVAYLLIYGELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLSAFYPD 147          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY1_MYCTU (Citrate synthase 1 OS=Mycobacterium tuberculosis GN=gltA2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.575e-25
Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = 3
Query:  366 GLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            G   +D G+ NTA  +SSI YIDGD GILRYRGYPI++LAE S+F+EV YLL+YG LP   QL  +   + +H+ + + +       P +AHPM VL S ++ALS ++ DA
Sbjct:   41 GHTTFDVGFANTAAAKSSITYIDGDAGILRYRGYPIDQLAEKSTFIEVCYLLIYGELPDTDQLAQFTGRIQRHTMLHEDLKRFFDGFPRNAHPMPVLSSVVNALSAYYQDA 151          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICJA (Citrate synthase (Fragment) OS=Rickettsia japonica GN=gltA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25
Identity = 57/139 (41.01%), Postives = 88/139 (63.31%), Query Frame = 3
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            GK +++P+ +       D   I+    +     YDPG+++TA  +S++ YIDGD+GILR+RGY I++LAE S FLEVAYLL+YG LPS  Q  ++   V+ HS V   +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   11 GKIFKLPILKASI--GEDVIDISRVSAEADCFTYDPGFMSTASCQSTVTYIDGDKGILRHRGYDIKDLAEKSDFLEVAYLLIYGELPSGEQYNNFTKQVAHHSLVNDRLHYLFQTFCSSSHPMAIMLAAVGSLSAFYPD 147          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RHIME (Citrate synthase OS=Rhizobium meliloti GN=gltA PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.738e-24
Identity = 58/140 (41.43%), Postives = 85/140 (60.71%), Query Frame = 3
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            GK   +PV + G++   D   I +      +  YDPG+ +TA   S I YIDGDEG+L +RG+PIE+LAE   FLEV YLL+YG LP+++Q  D+++ V+ H+ V + +         DAHPM V+   + ALS F+ D+
Sbjct:   12 GKSADLPV-RSGSI-GPDVVDIGSLYKQTTMFTYDPGFTSTASCESKITYIDGDEGVLLHRGFPIEQLAEHGDFLEVCYLLLYGELPTKAQKADFDYRVTHHTMVHEQMSRFFTGFRRDAHPMAVMCGCVGALSAFYHDS 149          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICTY (Citrate synthase OS=Rickettsia typhi GN=gltA PE=3 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 2.965e-24
Identity = 55/139 (39.57%), Postives = 89/139 (64.03%), Query Frame = 3
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            GK +++P+ +    K  D   I+    +     YDPG+++TA  +S+I YIDGD+GIL +RGY I++LAE S FLEVAYL++YG LPS  Q  ++   ++ H+ V + +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   18 GKMFKLPILKASIGK--DVIDISRVSAEADCFTYDPGFMSTASCQSTITYIDGDKGILWHRGYDIKDLAEKSDFLEVAYLMIYGELPSSEQYHNFTTKIAHHALVNERLHYLFQTFCSSSHPMAIMLAAVGSLSAFYPD 154          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY2_RHITR (Citrate synthase, plasmid OS=Rhizobium tropici GN=pcsA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 52/107 (48.60%), Postives = 71/107 (66.36%), Query Frame = 3
Query:  378 YDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            YDPG+ +TA   SSI +IDGDEG+L +RGYPIE+LAE   FLEV YLL+YG LP+ +Q  D+++ V  H+ V + +         DAHPM V+   + ALS F+ D+
Sbjct:   43 YDPGFTSTASCESSITFIDGDEGVLLHRGYPIEQLAEHGDFLEVCYLLLYGELPTAAQKKDFDYRVVHHTMVHEQMSRFFTGFRRDAHPMAVMCGCVGALSAFYHDS 149          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY1_RHITR (Citrate synthase, chromosomal OS=Rhizobium tropici GN=ccsA PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 52/107 (48.60%), Postives = 71/107 (66.36%), Query Frame = 3
Query:  378 YDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            YDPG+ +TA   SSI +IDGDEG+L +RGYPIE+LAE   FLEV YLL+YG LP+ +Q  D+++ V  H+ V + +         DAHPM V+   + ALS F+ D+
Sbjct:   43 YDPGFTSTASCESSITFIDGDEGVLLHRGYPIEQLAEHGDFLEVCYLLLYGELPTAAQKKDFDYRVVHHTMVHEQMSRFFTGFRRDAHPMAVMCGCVGALSAFYHDS 149          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_BARHE (Citrate synthase OS=Bartonella henselae GN=gltA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23
Identity = 58/151 (38.41%), Postives = 90/151 (59.60%), Query Frame = 3
Query:  246 KGSLTVVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            K  +TV D    K+ ++ V ++GT+   D  +I +   +     YDPG+ +TA   S I YIDG+EGIL YRGYPI++LAE   FLE  YLL+YG LP++ +  D++  + QH+ V +           D+HPM V+++ + A+S F+ D+
Sbjct:    5 KAHITVND----KKIELSV-RKGTL-GPDVIEIASLYKETDTFTYDPGFTSTASCESKITYIDGNEGILLYRGYPIDQLAEKGDFLESCYLLLYGELPTKQEKIDFDRCIMQHTMVHEQFARFFHGFRRDSHPMAVMIACLGAMSAFYHDS 149          
The following BLAST results are available for this feature:
BLAST of FC868517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CISY_RICAU3.503e-2541.73Citrate synthase (Fragment) OS=Rickettsia australi... [more]
CISY_RICAE3.503e-2541.73Citrate synthase OS=Rickettsia africae (strain ESF... [more]
CISY_ASTRI3.503e-2541.73Citrate synthase (Fragment) OS=Astrakhan rickettsi... [more]
CISY1_MYCTU4.575e-2548.65Citrate synthase 1 OS=Mycobacterium tuberculosis G... [more]
CISY_RICJA7.803e-2541.01Citrate synthase (Fragment) OS=Rickettsia japonica... [more]
CISY_RHIME1.738e-2441.43Citrate synthase OS=Rhizobium meliloti GN=gltA PE=... [more]
CISY_RICTY2.965e-2439.57Citrate synthase OS=Rickettsia typhi GN=gltA PE=3 ... [more]
CISY2_RHITR3.873e-2448.60Citrate synthase, plasmid OS=Rhizobium tropici GN=... [more]
CISY1_RHITR3.873e-2448.60Citrate synthase, chromosomal OS=Rhizobium tropici... [more]
CISY_BARHE1.472e-2338.41Citrate synthase OS=Bartonella henselae GN=gltA PE... [more]

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Properties
Property NameValue
Genbank descriptionC31001D05EF AbioticL1 Citrus clementina cDNA clone C31001D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868517 ID=FC868517; Name=FC868517; organism=Citrus clementina; type=EST; length=699bp
GAAATTCATTTATTCAATTTGTATTCACTCATTCATCAACCGAATCAATT
GGACTAGAGCTCGTTTTATCTAGTTTTGCTTCAAAAACAATGGCGCCAAG
CGTAGAATCATCGTCGGCCGTTACAGCTCGTGGGCGGTTGGCCGTACTGA
CAGCTCATTTGGCATCAACCGAGTCAAATCAAGGCAGGCTCATCGAGCCA
TGGTGCACCTCTGCTCAGTCCATGGTACCACCTCCGGGAAATCTCAAGGG
CAGCTTGACCGTCGTCGACGAACGAACCGGCAAAAGATACCAGATACCTG
TCTCTCAGGAAGGCACCGTTAAAGCCACCGACTTCAAGAAGATAACAACA
GGAAAGAACGACAAGGGTTTGAAACTGTATGATCCGGGGTACTTGAACAC
GGCGCCTGTGAGATCATCAATTTGTTATATTGATGGAGATGAGGGTATCC
TTAGATACAGAGGCTACCCTATTGAGGAATTGGCAGAGTCCAGTTCTTTC
TTGGAAGTCGCTTATCTTTTGATGTATGGGAATTTGCCTTCCGAAAGTCA
GCTGACAGACTGGGAATTTGCTGTGTCTCAGCATTCTGCCGTGCCACAGG
GAATTTTGGATATTATCCAGGCAATGCCTCATGATGCACACCCTATGGGA
GTGCTTGTCAGTGCTATGAGTGCTCTTTCTATCTTTCATCCTGATGCCA
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