FC868517

Overview
NameFC868517
Unique NameFC868517
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5909 contig Ccv1_Contig5909:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_BARQU (Citrate synthase OS=Bartonella quintana GN=gltA PE=3 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 3
Query:  378 YDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            YDPG+ +TA   S I YIDGD+GIL Y GYPI++LAE   FLE  YLL+YG LP++ +  D++  + QH  V +           D+HPM V+V+ + A+S F+ D+
Sbjct:   43 YDPGFTSTASCESKITYIDGDKGILLYCGYPIDQLAEKGDFLESCYLLLYGELPTKQEKIDFDRCIMQHMMVHEQFTRFFHGFRRDSHPMAVMVACLGAMSAFYHDS 149          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_SALTY (Citrate synthase OS=Salmonella typhimurium GN=gltA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 45/112 (40.18%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  363 KGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            KG+  +DPG+ +TA   S I +IDGDEGIL +RG+PI++LA  S++LEV Y+L+YG  P++ +  ++   V++H+ + + I  +  A   D+HPM V+     AL+ F+ D+
Sbjct:   38 KGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLYGEKPTQEEYDEFRTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDS 149          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_CORGL (Citrate synthase OS=Corynebacterium glutamicum GN=gltA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 48/113 (42.48%), Postives = 71/113 (62.83%), Query Frame = 3
Query:  357 NDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            ++ GL  +DPGY++T    S I YIDGD GILRYRGY I +LAE+++F EV+YLL+ G LP+  +L  +   +  H+ + +         P DAHPM  L S+++ LS ++ D
Sbjct:   44 SETGLITFDPGYVSTGSTESKITYIDGDAGILRYRGYDIADLAENATFNEVSYLLINGELPTPDELHKFNDEIRHHTLLDEDFKSQFNVFPRDAHPMATLASSVNILSTYYQD 156          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_COXBU (Citrate synthase OS=Coxiella burnetii GN=gltA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 46/111 (41.44%), Postives = 72/111 (64.86%), Query Frame = 3
Query:  366 GLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            G    D G+ +TA   S I +IDG++GIL YRGYPI++LA+ S ++EV YLLMYG LP++ +   +   + +H++V + +        +DAHPM +++S + ALS F+ DA
Sbjct:   38 GAYALDVGFYSTAACESKITFIDGEKGILLYRGYPIDQLADKSDYMEVCYLLMYGELPNKGEKEKFVRTIKEHTSVYEQVTKFFNGFHYDAHPMAMVLSTIGALSAFYHDA 148          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_PSEAE (Citrate synthase OS=Pseudomonas aeruginosa GN=gltA PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  378 YDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            +DPG+++TA   S I YIDGD+G+L +RGYPIE+LAE S +LE  YLL+ G LP+ +Q   +   +  H+ V + +         DAHPM V+   + ALS F+ D+
Sbjct:   43 FDPGFMSTASCESKITYIDGDKGVLLHRGYPIEQLAEKSDYLETCYLLLNGELPTAAQKEQFVGTIKNHTMVHEQLKTFFNGFRRDAHPMAVMCGVIGALSAFYHDS 149          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_ECOLI (Citrate synthase OS=Escherichia coli (strain K12) GN=gltA PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 45/112 (40.18%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  363 KGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            KG+  +DPG+ +TA   S I +IDGDEGIL +RG+PI++LA  S++LEV Y+L+ G  P++ Q  +++  V++H+ + + I  +  A   D+HPM V+     AL+ F+ D+
Sbjct:   38 KGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDS 149          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_ECOL6 (Citrate synthase OS=Escherichia coli O6 GN=gltA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 45/112 (40.18%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  363 KGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            KG+  +DPG+ +TA   S I +IDGDEGIL +RG+PI++LA  S++LEV Y+L+ G  P++ Q  +++  V++H+ + + I  +  A   D+HPM V+     AL+ F+ D+
Sbjct:   38 KGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDS 149          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_ACEAC (Citrate synthase OS=Acetobacter aceti GN=aarA PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 59/156 (37.82%), Postives = 88/156 (56.41%), Query Frame = 3
Query:  237 GNLKGSLTVVDERTGKRYQIPVSQEGTV--KATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            G L  +   VD   GK  ++PV   GT+     D +K+       G+  +DPGY  TA   S I +IDGD+G+L +RGYPI +L E++S+ EV YLL+ G LP++ Q   +   ++ H+ + + I +       DAHPM +L   + ALS F+PDA
Sbjct:    8 GKLSTATISVD---GKSAEMPVLS-GTLGPDVIDIRKLPA---QLGVFTFDPGYGETAACNSKITFIDGDKGVLLHRGYPIAQLDENASYEEVIYLLLNGELPNKVQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALSAFYPDA 156          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_BARDO (Citrate synthase (Fragment) OS=Bartonella doshiae GN=gltA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 3
Query:  426 YIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            YIDGD+GIL YRGYPIE+LAE   FLE  YLL+YG LP++ +  D++  + QH+ V +      Q    D+HPM V+V+ + A+S F+ D+
Sbjct:    2 YIDGDKGILLYRGYPIEQLAEKGDFLESCYLLLYGELPTQQEKNDFDRRIMQHTMVHEQFSRFFQGFRRDSHPMAVMVACLGAMSAFYHDS 92          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_ACIAN (Citrate synthase OS=Acinetobacter calcoaceticus subsp. anitratus GN=gltA PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 3
Query:  279 GKRYQIPVSQEGTV--KATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFH 689
            GK  ++P+   GT+     D K +       G   +DPG++ TA   S I +IDGD+GIL +RGYPI++LA  + +LE  YLL+ G LP+  Q  +++  V  H+ V   +         DAHPM ++V  + ALS F+
Sbjct:   15 GKEIELPI-YSGTLGPDVIDVKDVLAS----GHFTFDPGFMATASCESKITFIDGDKGILLHRGYPIDQLATQADYLETCYLLLNGELPTAEQKVEFDAKVRAHTMVHDQVSRFFNGFRRDAHPMAIMVGVVGALSAFY 148          
The following BLAST results are available for this feature:
BLAST of FC868517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CISY_BARQU2.125e-2244.86Citrate synthase OS=Bartonella quintana GN=gltA PE... [more]
CISY_SALTY1.377e-2140.18Citrate synthase OS=Salmonella typhimurium GN=gltA... [more]
CISY_CORGL1.377e-2142.48Citrate synthase OS=Corynebacterium glutamicum GN=... [more]
CISY_COXBU4.008e-2141.44Citrate synthase OS=Coxiella burnetii GN=gltA PE=3... [more]
CISY_PSEAE5.234e-2142.99Citrate synthase OS=Pseudomonas aeruginosa GN=gltA... [more]
CISY_ECOLI5.234e-2140.18Citrate synthase OS=Escherichia coli (strain K12) ... [more]
CISY_ECOL65.234e-2140.18Citrate synthase OS=Escherichia coli O6 GN=gltA PE... [more]
CISY_ACEAC6.836e-2137.82Citrate synthase OS=Acetobacter aceti GN=aarA PE=1... [more]
CISY_BARDO1.684e-1947.25Citrate synthase (Fragment) OS=Bartonella doshiae ... [more]
CISY_ACIAN1.684e-1936.69Citrate synthase OS=Acinetobacter calcoaceticus su... [more]

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Properties
Property NameValue
Genbank descriptionC31001D05EF AbioticL1 Citrus clementina cDNA clone C31001D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868517 ID=FC868517; Name=FC868517; organism=Citrus clementina; type=EST; length=699bp
GAAATTCATTTATTCAATTTGTATTCACTCATTCATCAACCGAATCAATT
GGACTAGAGCTCGTTTTATCTAGTTTTGCTTCAAAAACAATGGCGCCAAG
CGTAGAATCATCGTCGGCCGTTACAGCTCGTGGGCGGTTGGCCGTACTGA
CAGCTCATTTGGCATCAACCGAGTCAAATCAAGGCAGGCTCATCGAGCCA
TGGTGCACCTCTGCTCAGTCCATGGTACCACCTCCGGGAAATCTCAAGGG
CAGCTTGACCGTCGTCGACGAACGAACCGGCAAAAGATACCAGATACCTG
TCTCTCAGGAAGGCACCGTTAAAGCCACCGACTTCAAGAAGATAACAACA
GGAAAGAACGACAAGGGTTTGAAACTGTATGATCCGGGGTACTTGAACAC
GGCGCCTGTGAGATCATCAATTTGTTATATTGATGGAGATGAGGGTATCC
TTAGATACAGAGGCTACCCTATTGAGGAATTGGCAGAGTCCAGTTCTTTC
TTGGAAGTCGCTTATCTTTTGATGTATGGGAATTTGCCTTCCGAAAGTCA
GCTGACAGACTGGGAATTTGCTGTGTCTCAGCATTCTGCCGTGCCACAGG
GAATTTTGGATATTATCCAGGCAATGCCTCATGATGCACACCCTATGGGA
GTGCTTGTCAGTGCTATGAGTGCTCTTTCTATCTTTCATCCTGATGCCA
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