FC868517

Overview
NameFC868517
Unique NameFC868517
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5909 contig Ccv1_Contig5909:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_SYNY3 (Citrate synthase OS=Synechocystis sp. (strain PCC 6803) GN=gltA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 40/106 (37.74%), Postives = 70/106 (66.04%), Query Frame = 3
Query:  372 KLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFH 689
            +++  G       +S + ++DG +GIL YRG  IEELA+SSSF+EVAYLL++G LP+++++ ++E+ +  H  +   I D+++  P   HPM  L ++ +AL +F+
Sbjct:    9 EVFKEGLAGVPAAKSRVSHVDGTDGILEYRGIRIEELAKSSSFIEVAYLLIWGKLPTQAEIEEFEYEIRTHRRIKYHIRDMMKCFPETGHPMDALQTSAAALGLFY 114          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_BAREL (Citrate synthase (Fragment) OS=Bartonella elizabethae GN=gltA PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = 3
Query:  426 YIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            YIDGD+GIL YRGYPI++LAE   FLE  YLL+YG LP++ +  D++  + QH+ V +           D+HPM V+V+ + A+S F+ D+
Sbjct:    1 YIDGDKGILLYRGYPIDQLAEKGDFLESCYLLLYGELPTQQEKNDFDRCIMQHTMVHEQFSRFFHGFRRDSHPMAVMVACLGAMSAFYHDS 91          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_PYRFU (Citrate synthase OS=Pyrococcus furiosus GN=gltA PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 42/89 (47.19%), Postives = 66/89 (74.16%), Query Frame = 3
Query:  411 RSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSAL 677
            +++ICYIDG EG L YRGY +EELAE S+F EV YLL +G LPS S+L +++  +++   +P+ +++I++A+P + HPMG L + +S L
Sbjct:   18 QTNICYIDGKEGKLYYRGYSVEELAELSTFEEVVYLLWWGKLPSLSELENFKKELAKSRGLPKEVIEIMEALPKNTHPMGALRTIISYL 106          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_BARTA (Citrate synthase (Fragment) OS=Bartonella taylorii GN=gltA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 40/91 (43.96%), Postives = 60/91 (65.93%), Query Frame = 3
Query:  426 YIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            YIDG++GIL YRGYPI++LAE   FLE  YLL+YG LP++ +  D++  + QH+ V +           D+HPM V+V+ + A+S F+ D+
Sbjct:    2 YIDGNKGILLYRGYPIDQLAERGDFLESCYLLLYGELPTKQEKHDFDRCIMQHTMVHEQFARFFHGFRRDSHPMAVMVACLGAMSAFYHDS 92          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_BARBA (Citrate synthase (Fragment) OS=Bartonella bacilliformis GN=gltA PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  426 YIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            YIDGDEGIL Y GY I++LAE+  FLE  YLL+YG LP++ Q  D++  + +H+ V +           D+HPM V+V+ + A+S F+ D+
Sbjct:    1 YIDGDEGILLYHGYSIDQLAENGDFLETCYLLLYGELPNKQQKIDFDRCIMRHTMVHEQFARFFHGFRRDSHPMAVMVACLGAMSAFYHDS 91          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_BARVI (Citrate synthase (Fragment) OS=Bartonella vinsonii GN=gltA PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 39/89 (43.82%), Postives = 59/89 (66.29%), Query Frame = 3
Query:  432 DGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            DG++GIL YRGYPIE+LAE   FLE  YLL+YG LP++ + +D++  + QH+ V +           D+HPM V+V+ + A+S F+ D+
Sbjct:    1 DGNKGILLYRGYPIEQLAEKGDFLESCYLLLYGELPTQQEKSDFDRCIMQHTMVHEQFARFFHGFRRDSHPMAVMVACLGAMSAFYHDS 89          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_HELPY (Citrate synthase OS=Helicobacter pylori GN=gltA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 3
Query:  252 SLTVVDERTGKRYQIP-VSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLP-SESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFH 689
            S+T+V+    +RY+   +      KA DF K+       G   YDPGY +TA  +S I Y++G +G L YRG+ IE+L     +++V  LL+ G LP ++ +  ++E  +   S V + +L++  A P +AHPM  L S +S LS  +
Sbjct:    2 SVTLVNNENNERYEFETIESTRGPKAVDFSKLF---ETTGFFSYDPGYSSTAGCQSKISYVNGKKGELYYRGHRIEDLVAKYKYVDVCKLLLTGELPKNQDESLEFELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILSTLY 146          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_HELPJ (Citrate synthase OS=Helicobacter pylori J99 GN=gltA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 51/148 (34.46%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  252 SLTVVDERTGKRYQIPVSQ-EGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLP-SESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFH 689
            S+T+++     RY+    +     KA DF K+       G   YDPGY +TA  +S I YI+G +G L YRG+ IE+L     +++V  LL+ G LP ++ +  ++E  +   S V + +L++  A P +AHPM  L S +S LS  +
Sbjct:    2 SVTLINNENNARYEFETIECTRGPKAVDFSKLF---ETTGFFSYDPGYSSTAGCQSKISYINGKKGELYYRGHRIEDLVAKYKYVDVCRLLLTGELPKNQDESLEFELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILSTLY 146          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_SULSO (Citrate synthase OS=Sulfolobus solfataricus GN=gltA PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 37/89 (41.57%), Postives = 60/89 (67.42%), Query Frame = 3
Query:  414 SSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALS 680
            +++ +IDG++GILRYRGY IE+L    S+ E  YL++YG LP++ +L D +  +++   VPQ +LD I  MP +A  +G+L    +AL+
Sbjct:   16 TNLTFIDGEKGILRYRGYNIEDLVNYGSYEETIYLMLYGKLPTKKELNDLKAKLNEEYEVPQEVLDTIYLMPKEADAIGLLEVGTAALA 104          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_THIFE (Citrate synthase OS=Thiobacillus ferrooxidans GN=gltA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  378 YDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHP 692
            + PG    A  +SSI  IDG  G+L YRG+ I +LA  SSF EVA LL+ G LP  + L  ++  +  H  V   + +I++ MP   HPM +L  A+++L +F+P
Sbjct:    6 FAPGLEGVAATQSSISNIDGAAGLLSYRGFAIADLAAHSSFEEVALLLLDGVLPGAADLERFDHGLRAHRQVKYNVREIMKFMPVTGHPMDMLHCAVASLGMFYP 110          
The following BLAST results are available for this feature:
BLAST of FC868517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CISY_SYNY31.091e-1837.74Citrate synthase OS=Synechocystis sp. (strain PCC ... [more]
CISY_BAREL1.091e-1845.05Citrate synthase (Fragment) OS=Bartonella elizabet... [more]
CISY_PYRFU7.074e-1847.19Citrate synthase OS=Pyrococcus furiosus GN=gltA PE... [more]
CISY_BARTA9.239e-1843.96Citrate synthase (Fragment) OS=Bartonella taylorii... [more]
CISY_BARBA9.239e-1843.96Citrate synthase (Fragment) OS=Bartonella bacillif... [more]
CISY_BARVI2.058e-1743.82Citrate synthase (Fragment) OS=Bartonella vinsonii... [more]
CISY_HELPY2.688e-1734.46Citrate synthase OS=Helicobacter pylori GN=gltA PE... [more]
CISY_HELPJ1.022e-1634.46Citrate synthase OS=Helicobacter pylori J99 GN=glt... [more]
CISY_SULSO7.321e-1541.57Citrate synthase OS=Sulfolobus solfataricus GN=glt... [more]
CISY_THIFE2.130e-1440.00Citrate synthase OS=Thiobacillus ferrooxidans GN=g... [more]

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Properties
Property NameValue
Genbank descriptionC31001D05EF AbioticL1 Citrus clementina cDNA clone C31001D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868517 ID=FC868517; Name=FC868517; organism=Citrus clementina; type=EST; length=699bp
GAAATTCATTTATTCAATTTGTATTCACTCATTCATCAACCGAATCAATT
GGACTAGAGCTCGTTTTATCTAGTTTTGCTTCAAAAACAATGGCGCCAAG
CGTAGAATCATCGTCGGCCGTTACAGCTCGTGGGCGGTTGGCCGTACTGA
CAGCTCATTTGGCATCAACCGAGTCAAATCAAGGCAGGCTCATCGAGCCA
TGGTGCACCTCTGCTCAGTCCATGGTACCACCTCCGGGAAATCTCAAGGG
CAGCTTGACCGTCGTCGACGAACGAACCGGCAAAAGATACCAGATACCTG
TCTCTCAGGAAGGCACCGTTAAAGCCACCGACTTCAAGAAGATAACAACA
GGAAAGAACGACAAGGGTTTGAAACTGTATGATCCGGGGTACTTGAACAC
GGCGCCTGTGAGATCATCAATTTGTTATATTGATGGAGATGAGGGTATCC
TTAGATACAGAGGCTACCCTATTGAGGAATTGGCAGAGTCCAGTTCTTTC
TTGGAAGTCGCTTATCTTTTGATGTATGGGAATTTGCCTTCCGAAAGTCA
GCTGACAGACTGGGAATTTGCTGTGTCTCAGCATTCTGCCGTGCCACAGG
GAATTTTGGATATTATCCAGGCAATGCCTCATGATGCACACCCTATGGGA
GTGCTTGTCAGTGCTATGAGTGCTCTTTCTATCTTTCATCCTGATGCCA
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