FC868517

Overview
NameFC868517
Unique NameFC868517
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5909 contig Ccv1_Contig5909:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: PRPC1_CORGL (2-methylcitrate synthase 1 OS=Corynebacterium glutamicum GN=prpC1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = 3
Query:  414 SSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            +SI  +  +   L YRGY +E+L E+ SF EV YLL +G LP+  QL  +      + ++  G++ +I ++P+  HPM VL +A+S +  F PD
Sbjct:   18 TSISKVMPESNSLTYRGYAVEDLVENCSFEEVIYLLWFGELPTTEQLRTFNTTGRSYRSLDAGLISLIHSLPNTCHPMDVLRTAVSYMGTFDPD 111          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY3_BACSU (2-methylcitrate synthase OS=Bacillus subtilis GN=mmgD PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  378 YDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALS 680
            Y PG        + I Y+D     +  RGY + EL+E+ S+LE+ +LL+ G LP ES++   E  ++  S++P   L +++ +P D HPM  L + +SAL+
Sbjct:    7 YSPGLDGVIAAETHISYLDTQSSQILIRGYDLIELSETKSYLELVHLLLEGRLPEESEMETLERKINSASSLPADHLRLLELLPEDTHPMDGLRTGLSALA 107          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: Y7281_DICDI (Citrate synthase-related protein DDB_G0287281 OS=Dictyostelium discoideum GN=DDB_G0287281 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 34/95 (35.79%), Postives = 59/95 (62.11%), Query Frame = 3
Query:  414 SSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            S IC ++ D   + YRGY I++L   SSF EV++LL+YG LP+E +L ++   +  +  +P+ +  +++ +P  AHP+ VL +A S  S   P++
Sbjct:    5 SKICLVNEDS--IYYRGYDIKDLTAVSSFEEVSFLLIYGELPTERELIEYRSELQHYRYIPESLKQVLERIPIYAHPIDVLKTACSFYSTISPES 97          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_DEIRA (Citrate synthase OS=Deinococcus radiodurans GN=gltA PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 3
Query:  414 SSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            S + +I+G EGIL + G PI+E AE S+F E++  L+   LP+  +L  ++  +  + A+P  ++ II+ MP   HPM  L +A+S L +  P A
Sbjct:   16 SKLTFINGSEGILTHLGIPIQEWAEKSTFEELSLALLDAKLPTAEELAKFDAELKANRAIPDQLVGIIRDMPKGVHPMQALRTAVSYLGLLDPQA 110          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_BACSU (Citrate synthase 1 OS=Bacillus subtilis GN=citA PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 37/99 (37.37%), Postives = 63/99 (63.64%), Query Frame = 3
Query:  408 VRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALS----IFHP 692
            V +SI +IDG++G L YRG+  +++A + SF E AYL+++G LPS  +L  ++  ++    +P+ I  +IQ++P++   M VL + +SAL      FHP
Sbjct:   12 VETSISHIDGEKGRLIYRGHHAKDIALNHSFEEAAYLILFGKLPSTEELQVFKDKLAAERNLPEHIERLIQSLPNNMDDMSVLRTVVSALGENTYTFHP 110          
The following BLAST results are available for this feature:
BLAST of FC868517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
PRPC1_CORGL1.169e-1237.232-methylcitrate synthase 1 OS=Corynebacterium glut... [more]
CISY3_BACSU2.604e-1234.652-methylcitrate synthase OS=Bacillus subtilis GN=m... [more]
Y7281_DICDI5.801e-1235.79Citrate synthase-related protein DDB_G0287281 OS=D... [more]
CISY_DEIRA5.801e-1236.84Citrate synthase OS=Deinococcus radiodurans GN=glt... [more]
CISY_BACSU2.204e-1137.37Citrate synthase 1 OS=Bacillus subtilis GN=citA PE... [more]

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Properties
Property NameValue
Genbank descriptionC31001D05EF AbioticL1 Citrus clementina cDNA clone C31001D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868517 ID=FC868517; Name=FC868517; organism=Citrus clementina; type=EST; length=699bp
GAAATTCATTTATTCAATTTGTATTCACTCATTCATCAACCGAATCAATT
GGACTAGAGCTCGTTTTATCTAGTTTTGCTTCAAAAACAATGGCGCCAAG
CGTAGAATCATCGTCGGCCGTTACAGCTCGTGGGCGGTTGGCCGTACTGA
CAGCTCATTTGGCATCAACCGAGTCAAATCAAGGCAGGCTCATCGAGCCA
TGGTGCACCTCTGCTCAGTCCATGGTACCACCTCCGGGAAATCTCAAGGG
CAGCTTGACCGTCGTCGACGAACGAACCGGCAAAAGATACCAGATACCTG
TCTCTCAGGAAGGCACCGTTAAAGCCACCGACTTCAAGAAGATAACAACA
GGAAAGAACGACAAGGGTTTGAAACTGTATGATCCGGGGTACTTGAACAC
GGCGCCTGTGAGATCATCAATTTGTTATATTGATGGAGATGAGGGTATCC
TTAGATACAGAGGCTACCCTATTGAGGAATTGGCAGAGTCCAGTTCTTTC
TTGGAAGTCGCTTATCTTTTGATGTATGGGAATTTGCCTTCCGAAAGTCA
GCTGACAGACTGGGAATTTGCTGTGTCTCAGCATTCTGCCGTGCCACAGG
GAATTTTGGATATTATCCAGGCAATGCCTCATGATGCACACCCTATGGGA
GTGCTTGTCAGTGCTATGAGTGCTCTTTCTATCTTTCATCCTGATGCCA
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